Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   V6U62_RS02935 Genome accession   NZ_CP145860
Coordinates   561633..562559 (+) Length   308 a.a.
NCBI ID   WP_022496729.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 556633..567559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS02925 (V6U62_02915) amiA 558109..560079 (+) 1971 WP_155123796.1 peptide ABC transporter substrate-binding protein Regulator
  V6U62_RS02930 (V6U62_02920) amiC 560140..561633 (+) 1494 WP_022496730.1 ABC transporter permease Regulator
  V6U62_RS02935 (V6U62_02925) amiD 561633..562559 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U62_RS02940 (V6U62_02930) amiE 562569..563654 (+) 1086 WP_349955229.1 ABC transporter ATP-binding protein Regulator
  V6U62_RS02945 (V6U62_02935) amiF 563647..564576 (+) 930 WP_014632821.1 ATP-binding cassette domain-containing protein Regulator
  V6U62_RS02950 (V6U62_02940) - 564627..565412 (-) 786 WP_195914590.1 ABC transporter permease -
  V6U62_RS02955 (V6U62_02945) - 565424..566122 (-) 699 WP_118058083.1 ABC transporter ATP-binding protein -
  V6U62_RS02960 (V6U62_02950) - 566127..566504 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  V6U62_RS02965 (V6U62_02955) - 566686..567480 (+) 795 WP_195914591.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34637.76 Da        Isoelectric Point: 9.7054

>NTDB_id=940305 V6U62_RS02935 WP_022496729.1 561633..562559(+) (amiD) [Streptococcus salivarius strain KSS2]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFINVVIGLVVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=940305 V6U62_RS02935 WP_022496729.1 561633..562559(+) (amiD) [Streptococcus salivarius strain KSS2]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCAGTGATGCGTCAGTTCTTCAAGAAAAAGTCAACAACTGTCATGTTGGGAATCTTGATTGCTATCA
TTTTGATGAGCTTTATCTACCCAATGTTTTCAAAATTTGACTTCAATGACGTGTCTAAGGTTAATGACTTTAGTGTACGT
TATGTGCATCCAAATGCTCAATACTGGTTCGGTACGGACAGTAATGGTAAGTCTCTCTTTGACAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCATTAACGTTGTTATTGGTTTAGTCGTTGGTGCTGTTTGGGGGA
TTTCTAAGACCTTTGATATGATTATGATGGAAATCTACAACATCATCTCAAACATTCCTGCCCTCCTTGTCGTTATCGTC
TTGACTTACTCATTGGGTGCAGGTTTCTGGAACATGATTTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCTTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACTTTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAATATCATGCCACAACTTGTATCAGTTATCGTGACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCTTACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTACCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTCTCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

99.351

100

0.994
  amiD Streptococcus thermophilus LMG 18311

95.779

100

0.958
  amiD Streptococcus thermophilus LMD-9

95.779

100

0.958