Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   V6U62_RS02945 Genome accession   NZ_CP145860
Coordinates   563647..564576 (+) Length   309 a.a.
NCBI ID   WP_014632821.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 558647..569576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS02930 (V6U62_02920) amiC 560140..561633 (+) 1494 WP_022496730.1 ABC transporter permease Regulator
  V6U62_RS02935 (V6U62_02925) amiD 561633..562559 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U62_RS02940 (V6U62_02930) amiE 562569..563654 (+) 1086 WP_349955229.1 ABC transporter ATP-binding protein Regulator
  V6U62_RS02945 (V6U62_02935) amiF 563647..564576 (+) 930 WP_014632821.1 ATP-binding cassette domain-containing protein Regulator
  V6U62_RS02950 (V6U62_02940) - 564627..565412 (-) 786 WP_195914590.1 ABC transporter permease -
  V6U62_RS02955 (V6U62_02945) - 565424..566122 (-) 699 WP_118058083.1 ABC transporter ATP-binding protein -
  V6U62_RS02960 (V6U62_02950) - 566127..566504 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  V6U62_RS02965 (V6U62_02955) - 566686..567480 (+) 795 WP_195914591.1 HAD family hydrolase -
  V6U62_RS02970 (V6U62_02960) - 567473..568291 (+) 819 WP_002884514.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35046.11 Da        Isoelectric Point: 6.5101

>NTDB_id=940307 V6U62_RS02945 WP_014632821.1 563647..564576(+) (amiF) [Streptococcus salivarius strain KSS2]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVELRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=940307 V6U62_RS02945 WP_014632821.1 563647..564576(+) (amiF) [Streptococcus salivarius strain KSS2]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATCGGTCGTG
CCATTATCGGTTTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGGCACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGTATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCCAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAACACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGT
ATTGCGCGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATTGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCGATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACATGACTATTCTGTTGATAAACCAGAGATGGTTGAACTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.029

100

0.99
  amiF Streptococcus thermophilus LMG 18311

98.382

100

0.984
  amiF Streptococcus thermophilus LMD-9

98.058

100

0.981