Detailed information NTG0940209

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: V6T01_RS09510
• Genome accession: NZ_CP145856
• Coordinates: 2031652..2032080 (-)
• Length: 142 a.a.
• NCBI ID: WP_253183867.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2026652..2037080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6T01_RS09470 (V6T01_09445)	-	2026780..2027226 (-)	447	WP_013991259.1	hypothetical protein	-
V6T01_RS09475 (V6T01_09450)	-	2027304..2027960 (-)	657	WP_410541297.1	CPBP family intramembrane glutamic endopeptidase	-
V6T01_RS09480 (V6T01_09455)	-	2027972..2028169 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
V6T01_RS09485 (V6T01_09460)	-	2028420..2029613 (-)	1194	WP_003095894.1	acetate kinase	-
V6T01_RS09490 (V6T01_09465)	comYH	2029670..2030626 (-)	957	WP_155222522.1	class I SAM-dependent methyltransferase	Machinery gene
V6T01_RS09495 (V6T01_09470)	comGG	2030671..2030988 (-)	318	WP_155222523.1	competence type IV pilus minor pilin ComGG	-
V6T01_RS09500 (V6T01_09475)	comYF	2030966..2031403 (-)	438	WP_037600123.1	competence type IV pilus minor pilin ComGF	Machinery gene
V6T01_RS09505 (V6T01_09480)	comGE	2031390..2031680 (-)	291	WP_073689936.1	competence type IV pilus minor pilin ComGE	-
V6T01_RS09510 (V6T01_09485)	comYD	2031652..2032080 (-)	429	WP_253183867.1	competence type IV pilus minor pilin ComGD	Machinery gene
V6T01_RS09515 (V6T01_09490)	comYC	2032040..2032366 (-)	327	WP_410541296.1	competence type IV pilus major pilin ComGC	Machinery gene
V6T01_RS09520 (V6T01_09495)	comYB	2032363..2033463 (-)	1101	WP_410531677.1	competence type IV pilus assembly protein ComGB	Machinery gene
V6T01_RS09525 (V6T01_09500)	comYA	2033345..2034286 (-)	942	WP_410541295.1	competence type IV pilus ATPase ComGA	Machinery gene
V6T01_RS09530 (V6T01_09505)	-	2034367..2034729 (-)	363	WP_002887019.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15732.22 Da
• Isoelectric Point: 10.3019

>NTDB_id=940209 V6T01_RS09510 WP_253183867.1 2031652..2032080(-) (comYD) [Streptococcus salivarius strain KSS1]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAEGANVELQLTKD
KISNGKSSLVIPKSIHLDKGQTLMFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=940209 V6T01_RS09510 WP_253183867.1 2031652..2032080(-) (comYD) [Streptococcus salivarius strain KSS1]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTCACCTTGTTGGAGAGTCTGGTGACACTAGCAGT
GGTTGCCTTTCTCACTCTGAGTTTGTCAGGCTCAGTGACAGGTATTTTTCAACAGGTTGAAACTAACCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGCGGCAGAAGGGGCCAATGTTGAATTGCAGTTGACCAAGGAT
AAAATCAGTAACGGAAAATCCAGTCTGGTGATTCCTAAAAGTATTCATCTTGATAAGGGGCAGACGCTAATGTTTGATGC
CAAAGGAGGCAACTCGAGCCTCACCAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.962	92.254	0.507
comYD	Streptococcus mutans UA159	54.962	92.254	0.507
comYD	Streptococcus gordonii str. Challis substr. CH1	42.143	98.592	0.415
comGD/cglD	Streptococcus pneumoniae Rx1	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae D39	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae R6	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis NCTC 12261	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis SK321	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	44.882	89.437	0.401
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38