Detailed information NTG0940208

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: V6T01_RS09500
• Genome accession: NZ_CP145856
• Coordinates: 2030966..2031403 (-)
• Length: 145 a.a.
• NCBI ID: WP_037600123.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2025966..2036403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6T01_RS09465 (V6T01_09440)	-	2026005..2026667 (-)	663	WP_013991258.1	CPBP family intramembrane glutamic endopeptidase	-
V6T01_RS09470 (V6T01_09445)	-	2026780..2027226 (-)	447	WP_013991259.1	hypothetical protein	-
V6T01_RS09475 (V6T01_09450)	-	2027304..2027960 (-)	657	WP_410541297.1	CPBP family intramembrane glutamic endopeptidase	-
V6T01_RS09480 (V6T01_09455)	-	2027972..2028169 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
V6T01_RS09485 (V6T01_09460)	-	2028420..2029613 (-)	1194	WP_003095894.1	acetate kinase	-
V6T01_RS09490 (V6T01_09465)	comYH	2029670..2030626 (-)	957	WP_155222522.1	class I SAM-dependent methyltransferase	Machinery gene
V6T01_RS09495 (V6T01_09470)	comGG	2030671..2030988 (-)	318	WP_155222523.1	competence type IV pilus minor pilin ComGG	-
V6T01_RS09500 (V6T01_09475)	comYF	2030966..2031403 (-)	438	WP_037600123.1	competence type IV pilus minor pilin ComGF	Machinery gene
V6T01_RS09505 (V6T01_09480)	comGE	2031390..2031680 (-)	291	WP_073689936.1	competence type IV pilus minor pilin ComGE	-
V6T01_RS09510 (V6T01_09485)	comYD	2031652..2032080 (-)	429	WP_253183867.1	competence type IV pilus minor pilin ComGD	Machinery gene
V6T01_RS09515 (V6T01_09490)	comYC	2032040..2032366 (-)	327	WP_410541296.1	competence type IV pilus major pilin ComGC	Machinery gene
V6T01_RS09520 (V6T01_09495)	comYB	2032363..2033463 (-)	1101	WP_410531677.1	competence type IV pilus assembly protein ComGB	Machinery gene
V6T01_RS09525 (V6T01_09500)	comYA	2033345..2034286 (-)	942	WP_410541295.1	competence type IV pilus ATPase ComGA	Machinery gene
V6T01_RS09530 (V6T01_09505)	-	2034367..2034729 (-)	363	WP_002887019.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16246.64 Da
• Isoelectric Point: 8.4658

>NTDB_id=940208 V6T01_RS09500 WP_037600123.1 2030966..2031403(-) (comYF) [Streptococcus salivarius strain KSS1]
MSLNSKVRAFTLLECLVALLVIAGSIQVYQGLTTVLVSNVKQVKQQENQDWLLFVQQMEAELEGCQFVKVEGNKLYVKQD
NQDLAFGLSSATDFRKTNADGRGYQPMLFNVKSSTISQNNQIVTIQVTLKNGLQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=940208 V6T01_RS09500 WP_037600123.1 2030966..2031403(-) (comYF) [Streptococcus salivarius strain KSS1]
ATGTCTCTAAATAGTAAGGTCCGCGCCTTTACCCTCTTGGAATGTCTAGTAGCCTTGTTGGTGATTGCTGGTTCAATTCA
AGTTTATCAAGGTCTGACCACAGTATTGGTGAGCAATGTTAAGCAGGTCAAGCAACAAGAAAACCAAGACTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAGTTAGAAGGTTGTCAGTTTGTAAAGGTAGAAGGGAACAAACTCTATGTTAAGCAGGAT
AATCAAGACCTGGCTTTTGGACTTTCAAGTGCTACTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTACCAACCAAT
GCTTTTCAATGTAAAATCTAGTACGATTAGTCAAAATAACCAGATAGTCACCATCCAAGTGACTCTTAAAAATGGGCTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	56.028	97.241	0.545
comYF	Streptococcus mutans UA159	55.319	97.241	0.538
comGF/cglF	Streptococcus pneumoniae Rx1	51.408	97.931	0.503
comGF/cglF	Streptococcus pneumoniae D39	51.408	97.931	0.503
comGF/cglF	Streptococcus pneumoniae R6	51.408	97.931	0.503
comGF/cglF	Streptococcus pneumoniae TIGR4	51.408	97.931	0.503
comGF/cglF	Streptococcus mitis NCTC 12261	48.611	99.31	0.483
comGF/cglF	Streptococcus mitis SK321	48.611	99.31	0.483
comGF	Lactococcus lactis subsp. cremoris KW2	43.885	95.862	0.421