Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   V6T01_RS01425 Genome accession   NZ_CP145856
Coordinates   263141..264040 (+) Length   299 a.a.
NCBI ID   WP_410541231.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 258141..269040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS01405 (V6T01_01400) trkA 259305..260654 (-) 1350 WP_014633874.1 Trk system potassium transporter TrkA -
  V6T01_RS01410 (V6T01_01405) - 260932..261441 (+) 510 WP_070655612.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  V6T01_RS01415 (V6T01_01410) - 261750..262307 (+) 558 WP_410541232.1 ECF transporter S component -
  V6T01_RS01420 (V6T01_01415) - 262310..262960 (+) 651 WP_073687416.1 phosphatase PAP2 family protein -
  V6T01_RS01425 (V6T01_01420) comR 263141..264040 (+) 900 WP_410541231.1 XRE family transcriptional regulator Regulator
  V6T01_RS01430 (V6T01_01425) comA 264215..266311 (+) 2097 WP_037600272.1 peptide cleavage/export ABC transporter Regulator
  V6T01_RS01435 (V6T01_01430) - 266424..266756 (+) 333 WP_002886546.1 DUF805 domain-containing protein -
  V6T01_RS01440 (V6T01_01435) - 266807..267538 (-) 732 WP_410541230.1 DUF4153 domain-containing protein -
  V6T01_RS01445 (V6T01_01440) - 267542..268201 (-) 660 WP_229103932.1 urease cluster protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35181.65 Da        Isoelectric Point: 5.3732

>NTDB_id=940161 V6T01_RS01425 WP_410541231.1 263141..264040(+) (comR) [Streptococcus salivarius strain KSS1]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKNMADLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKAKLALIEEVYEKFFELLPEEELLTLDILENILSFTNWEESPKVEEIYEDLFEQVKRKKKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPNVFVLKAKYELLHKGNKKEAAENYDKAIMFASVLEDSVLEESIKAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=940161 V6T01_RS01425 WP_410541231.1 263141..264040(+) (comR) [Streptococcus salivarius strain KSS1]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGTCAGCAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTGCGTCAGTTAATTCGCATTGAAAAAGGGGAGTCGCTCCCGTCTTTGGATAAATTATCTT
ATATTGCAAAACGTCTAGGAAAAAATATGGCCGATTTATTGGATCATGACAATATTACCATTCCTGACGAATATTATGAG
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAATCCAGAAAGAATAAAGGCTAAACTTGCCTTAATTGAGGAAGT
CTATGAGAAATTCTTTGAACTTCTGCCAGAAGAAGAGTTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
ATTGGGAGGAGAGCCCAAAGGTTGAAGAAATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAAGAAATTCTCAACT
AACGATTTATTAGTTATTGACTATTATTTCTTCCATCTTTATGGAAGAAAGCAGTATGATAAAAAACTTTTTGAAAGAAT
CGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTCTATAATATTGTTTTATTTAACGATTTGATGGCTATCG
CTGCTTTGAAGATTTTTCACAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAATGTTTTTGTTCTCAAAGCCAAATATGAACTTCTGCATAAAGGAAACAAGAAAGAGGC
TGCAGAAAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTGCTAGAAGAAAGTATAAAGGCAGGTA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

98.328

100

0.983
  comR Streptococcus salivarius SK126

97.659

100

0.977
  comR Streptococcus thermophilus LMG 18311

94.314

100

0.943
  comR Streptococcus thermophilus LMD-9

93.645

100

0.936
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.809

100

0.428
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421