Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   V6T01_RS01430 Genome accession   NZ_CP145856
Coordinates   264215..266311 (+) Length   698 a.a.
NCBI ID   WP_037600272.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 259215..271311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS01405 (V6T01_01400) trkA 259305..260654 (-) 1350 WP_014633874.1 Trk system potassium transporter TrkA -
  V6T01_RS01410 (V6T01_01405) - 260932..261441 (+) 510 WP_070655612.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  V6T01_RS01415 (V6T01_01410) - 261750..262307 (+) 558 WP_410541232.1 ECF transporter S component -
  V6T01_RS01420 (V6T01_01415) - 262310..262960 (+) 651 WP_073687416.1 phosphatase PAP2 family protein -
  V6T01_RS01425 (V6T01_01420) comR 263141..264040 (+) 900 WP_410541231.1 XRE family transcriptional regulator Regulator
  V6T01_RS01430 (V6T01_01425) comA 264215..266311 (+) 2097 WP_037600272.1 peptide cleavage/export ABC transporter Regulator
  V6T01_RS01435 (V6T01_01430) - 266424..266756 (+) 333 WP_002886546.1 DUF805 domain-containing protein -
  V6T01_RS01440 (V6T01_01435) - 266807..267538 (-) 732 WP_410541230.1 DUF4153 domain-containing protein -
  V6T01_RS01445 (V6T01_01440) - 267542..268201 (-) 660 WP_229103932.1 urease cluster protein -
  V6T01_RS01450 (V6T01_01445) - 268606..269121 (+) 516 WP_002886548.1 AmiS/UreI family transporter -
  V6T01_RS01455 (V6T01_01450) - 269146..269448 (+) 303 WP_002886558.1 urease subunit gamma -
  V6T01_RS01460 (V6T01_01455) - 269460..269771 (+) 312 WP_002886559.1 urease subunit beta -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78499.44 Da        Isoelectric Point: 9.1917

>NTDB_id=940162 V6T01_RS01430 WP_037600272.1 264215..266311(+) (comA) [Streptococcus salivarius strain KSS1]
MSKYPYISQVDQRDCGVAALAMILKHYGSSYSLAYLRELAQTSREGTSALGLVEAAKQLGLETQAIRADLDLFKQENLSY
PFIVHVVKEGGLQHYYTVFGQIKGQLVIGDPDPSKKVIKMPLEEFAKEWTGVTLFFVPGETYTKYKEDVPGLLSFLPILF
RRKGLIAVIVLLSFLVTLVNIIGSYYLQAIIDRLIPQGAYNLLTMISLGLCISYLAQQVFTFFKDYLLHRLGNYLSIAVI
LPYIKHVLSLPISFFSSRRTGEITSRFGDANTIIEALASTILSIFLDVTIVMTLAVALIVQNQSLFVMTLTVVPLYVLII
VVFYKLFEKENYQLMEANSQVNTAVIDDLRGIETLKSLRVEDRRYREIEVKFHDYLKKSLSKAKWQLTQDGLKTGVQLVS
NVFILWYGAQLVMEGQLSAGQLITYNMLLNYFTTPLINIINLQSKIQQAKVANNRLQEVYVVDKEEKGKLKELSFKQLAF
KGVSHRFSYQQETLSKIDLTIHKGEKIALMGQSGSGKTTLAKMLSGYYTKSSGHVTLDKDAISHAELRQMVTYVPQQTYV
FTGTILENLLLGFEGEVDEKKLIKVCQQADILEDIQKMPLGFQTQVSEDGGLSGGQKQRLAIARALLSKQPILIFDEATS
GLDSDTESRVMANLAKIKRTMIFIAHRNSVRQHVSRVVTMVSGQIESDSANFNPFQFI

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=940162 V6T01_RS01430 WP_037600272.1 264215..266311(+) (comA) [Streptococcus salivarius strain KSS1]
ATGTCAAAATATCCATATATTTCACAGGTTGATCAGCGTGATTGTGGTGTCGCTGCCTTGGCTATGATTCTTAAACACTA
TGGTTCATCTTATAGTTTAGCTTATTTGCGAGAGTTGGCTCAGACTTCTCGTGAAGGTACTTCTGCGCTTGGTTTGGTGG
AAGCGGCCAAGCAGTTGGGTCTTGAAACTCAGGCTATTCGTGCGGATTTAGACTTGTTTAAACAAGAAAACCTATCTTAT
CCTTTTATTGTACATGTGGTTAAAGAAGGTGGGCTGCAACATTATTATACGGTGTTTGGTCAAATCAAGGGGCAGCTTGT
TATTGGTGATCCAGATCCTAGCAAGAAGGTCATTAAAATGCCCTTAGAGGAATTTGCCAAAGAGTGGACGGGAGTTACTC
TCTTTTTTGTTCCAGGAGAAACCTACACTAAATACAAAGAAGATGTACCTGGACTTCTTTCATTTTTACCAATTTTGTTT
CGTCGTAAGGGTTTGATTGCAGTTATTGTCTTATTAAGTTTTCTAGTGACCCTTGTTAATATTATTGGTTCTTATTATTT
GCAAGCTATTATCGACCGTTTGATTCCTCAGGGGGCCTATAATCTTCTGACCATGATTTCGCTAGGCTTATGCATCTCTT
ATCTTGCTCAACAAGTTTTTACTTTTTTCAAAGATTATCTTCTACATCGATTGGGTAATTACCTGTCCATTGCTGTCATT
CTTCCTTATATCAAGCATGTCCTTTCCTTGCCTATTAGTTTCTTTAGTTCACGTCGTACTGGTGAAATCACGTCACGTTT
TGGAGATGCTAACACTATTATCGAAGCTCTAGCTTCAACGATTTTATCGATTTTCCTAGATGTGACCATTGTGATGACTC
TAGCTGTGGCTCTTATTGTACAAAATCAGTCACTTTTTGTGATGACTCTCACGGTAGTTCCTCTTTATGTTTTAATCATT
GTGGTATTCTATAAGCTTTTTGAAAAGGAAAATTATCAATTGATGGAGGCAAATAGTCAGGTCAATACCGCTGTTATTGA
TGATTTGCGAGGTATTGAAACCTTAAAATCCTTGAGAGTTGAGGATAGACGTTATCGGGAAATTGAGGTGAAATTCCATG
ACTATTTGAAGAAGTCCTTGTCTAAGGCCAAGTGGCAATTAACGCAGGATGGGTTAAAGACAGGGGTTCAGTTAGTTTCT
AATGTCTTTATCCTCTGGTATGGGGCACAATTGGTTATGGAAGGGCAACTATCTGCAGGTCAGTTGATTACCTATAATAT
GTTGTTGAATTATTTTACAACTCCTTTAATTAATATCATCAATCTCCAATCTAAAATTCAGCAAGCCAAAGTCGCCAATA
ATCGTCTTCAAGAAGTATATGTTGTGGACAAGGAAGAAAAAGGAAAACTTAAAGAGTTATCTTTTAAACAACTTGCTTTT
AAAGGAGTTAGTCACCGTTTTAGTTATCAGCAAGAGACTCTTAGTAAGATTGATTTAACGATTCATAAGGGTGAGAAAAT
CGCCCTCATGGGTCAGAGTGGTTCTGGAAAAACGACCTTAGCTAAAATGTTGTCAGGTTATTATACGAAATCTAGTGGTC
ATGTAACCCTAGATAAAGATGCTATTAGCCATGCGGAGTTGCGTCAAATGGTGACTTACGTTCCCCAGCAGACCTATGTG
TTTACGGGAACCATTTTAGAAAATCTGCTATTAGGATTTGAAGGAGAAGTTGACGAGAAAAAGCTTATTAAAGTTTGCCA
ACAAGCTGATATCTTAGAGGATATTCAAAAAATGCCACTAGGCTTTCAGACCCAAGTATCTGAAGACGGTGGTTTGTCTG
GCGGTCAAAAACAAAGATTAGCTATAGCAAGGGCTCTATTGTCCAAACAACCTATCTTGATTTTTGACGAAGCTACTAGT
GGTCTCGATAGTGATACTGAAAGCAGGGTCATGGCTAATCTTGCTAAGATTAAACGAACAATGATTTTTATTGCTCATCG
CAATAGTGTACGTCAACATGTCAGTCGTGTAGTGACCATGGTGAGTGGCCAGATTGAGTCAGACAGTGCTAATTTCAATC
CATTCCAGTTTATTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(494-640)

Peptidase C39 family (Peptidase_C39)

(3-139)

ABC transporter transmembrane region (ABC_membrane)

(167-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.401

98.997

0.529
  comA Streptococcus gordonii str. Challis substr. CH1

52.73

99.713

0.526
  comA Streptococcus mitis NCTC 12261

52.967

98.997

0.524
  comA Streptococcus pneumoniae Rx1

52.822

98.997

0.523
  comA Streptococcus pneumoniae D39

52.822

98.997

0.523
  comA Streptococcus pneumoniae R6

52.822

98.997

0.523
  comA Streptococcus pneumoniae TIGR4

52.677

98.997

0.521
  comA/nlmT Streptococcus mutans UA159

50.29

98.854

0.497