Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | PT3_RS04075 | Genome accession | NZ_AP025761 |
| Coordinates | 898657..898938 (+) | Length | 93 a.a. |
| NCBI ID | WP_019622506.1 | Uniprot ID | - |
| Organism | Amphritea japonica strain JCM 14782 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 893657..903938
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT3_RS04050 | rpsA | 894280..895953 (+) | 1674 | WP_026340199.1 | 30S ribosomal protein S1 | - |
| PT3_RS04055 | ihfB | 896022..896321 (+) | 300 | WP_019622502.1 | integration host factor subunit beta | - |
| PT3_RS04060 | - | 896351..896656 (+) | 306 | WP_019622503.1 | lipopolysaccharide assembly protein LapA domain-containing protein | - |
| PT3_RS04065 | lapB | 896658..897833 (+) | 1176 | WP_019622504.1 | lipopolysaccharide assembly protein LapB | - |
| PT3_RS04070 | pyrF | 897866..898573 (+) | 708 | WP_019622505.1 | orotidine-5'-phosphate decarboxylase | - |
| PT3_RS04075 | comEA | 898657..898938 (+) | 282 | WP_019622506.1 | ComEA family DNA-binding protein | Machinery gene |
| PT3_RS04080 | - | 899016..899909 (-) | 894 | WP_019622507.1 | AEC family transporter | - |
| PT3_RS04085 | dtd | 899925..900362 (-) | 438 | WP_019622508.1 | D-aminoacyl-tRNA deacylase | - |
| PT3_RS04090 | pip | 900384..901334 (-) | 951 | WP_019622509.1 | prolyl aminopeptidase | - |
| PT3_RS04095 | typA | 901421..903241 (-) | 1821 | WP_019622510.1 | translational GTPase TypA | - |
Sequence
Protein
Download Length: 93 a.a. Molecular weight: 9958.60 Da Isoelectric Point: 4.9003
>NTDB_id=94000 PT3_RS04075 WP_019622506.1 898657..898938(+) (comEA) [Amphritea japonica strain JCM 14782]
MKWNSFIKTFLLTLCLTLPFNVSAGAMVNINTAPADMLVEMLQGIGPAKAQAIVDYREANGPFKTVDDLAKVKGIGSSTV
TKNLEVIAVDDSQ
MKWNSFIKTFLLTLCLTLPFNVSAGAMVNINTAPADMLVEMLQGIGPAKAQAIVDYREANGPFKTVDDLAKVKGIGSSTV
TKNLEVIAVDDSQ
Nucleotide
Download Length: 282 bp
>NTDB_id=94000 PT3_RS04075 WP_019622506.1 898657..898938(+) (comEA) [Amphritea japonica strain JCM 14782]
ATGAAATGGAATTCATTTATTAAGACGTTTTTACTGACACTCTGCCTGACATTGCCTTTTAATGTTTCAGCTGGAGCGAT
GGTGAATATCAATACGGCGCCTGCTGATATGCTGGTCGAGATGCTTCAGGGTATAGGTCCTGCTAAGGCGCAGGCGATCG
TTGATTACCGTGAAGCTAATGGGCCGTTCAAAACGGTTGATGATCTGGCTAAGGTGAAAGGGATAGGTAGCTCTACCGTT
ACAAAGAATCTTGAAGTCATAGCAGTCGATGACTCGCAGTAG
ATGAAATGGAATTCATTTATTAAGACGTTTTTACTGACACTCTGCCTGACATTGCCTTTTAATGTTTCAGCTGGAGCGAT
GGTGAATATCAATACGGCGCCTGCTGATATGCTGGTCGAGATGCTTCAGGGTATAGGTCCTGCTAAGGCGCAGGCGATCG
TTGATTACCGTGAAGCTAATGGGCCGTTCAAAACGGTTGATGATCTGGCTAAGGTGAAAGGGATAGGTAGCTCTACCGTT
ACAAAGAATCTTGAAGTCATAGCAGTCGATGACTCGCAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
51.546 |
100 |
0.538 |
| comEA | Vibrio cholerae strain A1552 |
51.546 |
100 |
0.538 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
46.465 |
100 |
0.495 |
| comEA | Vibrio campbellii strain DS40M4 |
43 |
100 |
0.462 |
| comE | Neisseria gonorrhoeae MS11 |
48.193 |
89.247 |
0.43 |
| comE | Neisseria gonorrhoeae MS11 |
48.193 |
89.247 |
0.43 |
| comE | Neisseria gonorrhoeae MS11 |
48.193 |
89.247 |
0.43 |
| comE | Neisseria gonorrhoeae MS11 |
48.193 |
89.247 |
0.43 |
| comEA | Acinetobacter baylyi ADP1 |
47.368 |
81.72 |
0.387 |