Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V6D45_RS17450 Genome accession   NZ_CP145722
Coordinates   3430861..3431457 (+) Length   198 a.a.
NCBI ID   WP_003219849.1    Uniprot ID   A0A9W5LL57
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3425861..3436457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS17420 (V6D45_17425) - 3426942..3428294 (+) 1353 WP_338443271.1 IS1182 family transposase -
  V6D45_RS17425 (V6D45_17430) - 3428493..3429077 (+) 585 WP_268391659.1 TetR family transcriptional regulator -
  V6D45_RS17430 (V6D45_17435) - 3429159..3429494 (+) 336 WP_014115257.1 multidrug efflux SMR transporter -
  V6D45_RS17435 (V6D45_17440) - 3429494..3429808 (+) 315 WP_268391661.1 multidrug efflux SMR transporter -
  V6D45_RS17440 (V6D45_17445) - 3429850..3430362 (-) 513 WP_014115259.1 DUF3231 family protein -
  V6D45_RS17450 (V6D45_17455) clpP 3430861..3431457 (+) 597 WP_003219849.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  V6D45_RS17455 (V6D45_17460) pgmB 3431528..3432202 (-) 675 WP_338443272.1 beta-phosphoglucomutase -
  V6D45_RS17460 (V6D45_17465) - 3432199..3433884 (-) 1686 WP_338443273.1 alpha-glucosidase -
  V6D45_RS17465 (V6D45_17470) - 3433877..3436150 (-) 2274 WP_338443274.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21873.14 Da        Isoelectric Point: 4.7114

>NTDB_id=939706 V6D45_RS17450 WP_003219849.1 3430861..3431457(+) (clpP) [Bacillus spizizenii strain kcgeb_S11]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTRNTEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=939706 V6D45_RS17450 WP_003219849.1 3430861..3431457(+) (clpP) [Bacillus spizizenii strain kcgeb_S11]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCAG
AAGACCCTGAAAAAGATATTTCTATTTACATCAACAGCCCGGGCGGCTCTATCACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAGCCAAAGGTATCTACAATTTGTATCGGTATGGCTGCATCAATGGGCGCGTTCCTGCTTGCTGCCGG
TGAAAAAGGCAAACGCTATGCGCTTCCAAATAGTGAAGTCATGATTCACCAGCCTCTTGGCGGCGCGCAAGGTCAGGCAA
CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTTCTTGCTGAGCGTACTGGCCAG
CCGCTTGAAGTGATCGAACGCGATACAGACCGCGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA
TAAAATTCTGACTCGCAACACTGAAGAGCAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

96.465

100

0.965
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.063

96.465

0.657
  clpP Streptococcus thermophilus LMG 18311

59.067

97.475

0.576
  clpP Streptococcus thermophilus LMD-9

59.067

97.475

0.576
  clpP Streptococcus pneumoniae Rx1

57.732

97.98

0.566
  clpP Streptococcus pneumoniae D39

57.732

97.98

0.566
  clpP Streptococcus pneumoniae R6

57.732

97.98

0.566
  clpP Streptococcus pneumoniae TIGR4

57.732

97.98

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

57.216

97.98

0.561
  clpP Streptococcus pyogenes JRS4

56.477

97.475

0.551
  clpP Streptococcus pyogenes MGAS315

56.477

97.475

0.551
  clpP Streptococcus mutans UA159

55.155

97.98

0.54
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.155

97.98

0.54