Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LLID5_RS05500 Genome accession   NZ_AP025701
Coordinates   1120954..1121358 (-) Length   134 a.a.
NCBI ID   WP_251919360.1    Uniprot ID   -
Organism   Lactococcus lactis strain ID-5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1115954..1126358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS05470 (LLID5_10700) - 1116110..1117642 (+) 1533 WP_058202813.1 Nramp family divalent metal transporter -
  LLID5_RS05475 (LLID5_10710) - 1117744..1118712 (+) 969 WP_251919358.1 PhoH family protein -
  LLID5_RS05480 (LLID5_10720) - 1118770..1119249 (+) 480 WP_003130650.1 NUDIX hydrolase -
  LLID5_RS05485 (LLID5_10730) ybeY 1119401..1119889 (+) 489 WP_021722516.1 rRNA maturation RNase YbeY -
  LLID5_RS05490 (LLID5_10740) - 1119873..1120328 (+) 456 WP_003130653.1 diacylglycerol kinase -
  LLID5_RS05495 (LLID5_10750) - 1120342..1120920 (+) 579 WP_251919359.1 nucleotidyltransferase family protein -
  LLID5_RS05500 comFC 1120954..1121358 (-) 405 WP_251919360.1 ComF family protein Machinery gene
  LLID5_RS05505 (LLID5_10770) comFA 1121613..1122923 (-) 1311 WP_251919361.1 DEAD/DEAH box helicase Machinery gene
  LLID5_RS05510 (LLID5_10780) - 1122980..1123609 (+) 630 WP_003130660.1 YigZ family protein -
  LLID5_RS05515 (LLID5_10790) - 1123743..1124240 (+) 498 WP_003130662.1 VanZ family protein -
  LLID5_RS05520 (LLID5_10800) - 1124288..1125307 (+) 1020 WP_012897709.1 DUF475 domain-containing protein -
  LLID5_RS05525 (LLID5_10810) - 1125422..1126168 (+) 747 WP_251919362.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15701.09 Da        Isoelectric Point: 9.8798

>NTDB_id=93735 LLID5_RS05500 WP_251919360.1 1120954..1121358(-) (comFC) [Lactococcus lactis strain ID-5]
MKDYFSQYKFVGDYRLYQIFEPYFKSISPKSPLVSITISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHTSQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=93735 LLID5_RS05500 WP_251919360.1 1120954..1121358(-) (comFC) [Lactococcus lactis strain ID-5]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAGTAT
TTCCCCAAAATCTCCTTTGGTTTCAATTACTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACACATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(90-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

64.925

100

0.649
  comFC/cflB Streptococcus mitis NCTC 12261

45.324

100

0.47
  comFC/cflB Streptococcus mitis SK321

45.324

100

0.47
  comFC/cflB Streptococcus pneumoniae TIGR4

43.165

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

43.165

100

0.448
  comFC/cflB Streptococcus pneumoniae D39

43.165

100

0.448
  comFC/cflB Streptococcus pneumoniae R6

43.165

100

0.448
  comFC Bacillus subtilis subsp. subtilis str. 168

36.806

100

0.396

Multiple sequence alignment