Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LLID5_RS05505 Genome accession   NZ_AP025701
Coordinates   1121613..1122923 (-) Length   436 a.a.
NCBI ID   WP_251919361.1    Uniprot ID   -
Organism   Lactococcus lactis strain ID-5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1116613..1127923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS05475 (LLID5_10710) - 1117744..1118712 (+) 969 WP_251919358.1 PhoH family protein -
  LLID5_RS05480 (LLID5_10720) - 1118770..1119249 (+) 480 WP_003130650.1 NUDIX hydrolase -
  LLID5_RS05485 (LLID5_10730) ybeY 1119401..1119889 (+) 489 WP_021722516.1 rRNA maturation RNase YbeY -
  LLID5_RS05490 (LLID5_10740) - 1119873..1120328 (+) 456 WP_003130653.1 diacylglycerol kinase -
  LLID5_RS05495 (LLID5_10750) - 1120342..1120920 (+) 579 WP_251919359.1 nucleotidyltransferase family protein -
  LLID5_RS05500 comFC 1120954..1121358 (-) 405 WP_251919360.1 ComF family protein Machinery gene
  LLID5_RS05505 (LLID5_10770) comFA 1121613..1122923 (-) 1311 WP_251919361.1 DEAD/DEAH box helicase Machinery gene
  LLID5_RS05510 (LLID5_10780) - 1122980..1123609 (+) 630 WP_003130660.1 YigZ family protein -
  LLID5_RS05515 (LLID5_10790) - 1123743..1124240 (+) 498 WP_003130662.1 VanZ family protein -
  LLID5_RS05520 (LLID5_10800) - 1124288..1125307 (+) 1020 WP_012897709.1 DUF475 domain-containing protein -
  LLID5_RS05525 (LLID5_10810) - 1125422..1126168 (+) 747 WP_251919362.1 bifunctional metallophosphatase/5'-nucleotidase -
  LLID5_RS05530 (LLID5_10820) glyQ 1126453..1127406 (+) 954 WP_003130667.1 glycine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 49825.30 Da        Isoelectric Point: 10.0552

>NTDB_id=93736 LLID5_RS05505 WP_251919361.1 1121613..1122923(-) (comFA) [Lactococcus lactis strain ID-5]
MSTNQEKLFGRLLLKNDILQLIKSTDKISVSKIFSNFLLEAKVNPILGMTSISSNKIKCNRCGTVHIKNSVKLPIGVFYC
PSCIQLGRVRSDEFLYFLPQKNFPKKSYINWSGKLTENQKSISNALCQEINSHQQIIVQAVTGAGKTEMIYQVIEQILES
GGVVGLASPRIDVCLELHQRLSHDFSCKIPLLYHDGDSYFRAPLIIMTSHQLLRFKEAFDLLIIDEVDAFPFRDNEMLYF
AAEKARKIEGNLIYLTATSTDKLEKDIKKQKLYPLFLPRRFHNFPLVVPKFFWKNKFDKKLIEQRNSGFPLLIFAAEIEF
GQEFAKQLQLKFPKEKIASVASTTKDRLEIVKAFRNKEITILIATSILERGVTFPNVDVFVINSEHPNFTKSALIQMAGR
VGRSPERPTGLVSFFHYGKSKAMCQAVREIKKMNQL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=93736 LLID5_RS05505 WP_251919361.1 1121613..1122923(-) (comFA) [Lactococcus lactis strain ID-5]
ATGAGCACTAATCAAGAAAAGTTATTTGGCCGTTTATTATTAAAAAATGATATTTTACAACTTATAAAAAGTACTGACAA
GATTTCTGTCAGTAAAATTTTTAGTAATTTTTTGTTAGAAGCGAAGGTGAATCCAATTTTGGGAATGACTTCAATTTCTT
CCAATAAAATAAAATGCAACCGTTGTGGGACTGTTCATATAAAAAATTCTGTCAAACTTCCAATTGGTGTATTTTACTGT
CCAAGTTGTATTCAATTAGGTCGAGTCCGTTCCGATGAATTCTTGTACTTTCTGCCACAAAAGAATTTCCCAAAGAAATC
ATATATAAACTGGTCGGGAAAACTGACAGAGAATCAAAAATCAATTTCAAATGCCCTCTGTCAGGAAATTAATTCTCATC
AGCAAATAATTGTCCAAGCTGTGACTGGAGCTGGAAAAACTGAAATGATTTATCAAGTCATTGAGCAAATTTTAGAAAGC
GGTGGAGTTGTTGGTCTAGCTAGTCCAAGAATTGATGTTTGTCTTGAACTTCATCAGCGATTATCACATGATTTTTCCTG
TAAGATTCCACTCTTATATCATGATGGCGACAGCTATTTCCGAGCTCCATTAATAATAATGACCAGTCATCAGCTTTTAC
GTTTCAAGGAAGCTTTTGATTTGCTGATTATTGATGAAGTTGATGCCTTTCCTTTTAGAGATAATGAAATGCTTTATTTT
GCGGCAGAAAAAGCAAGAAAAATAGAAGGAAATTTAATATATTTGACCGCAACTTCTACTGACAAACTTGAAAAAGATAT
AAAAAAGCAAAAACTCTATCCTTTGTTTCTCCCGCGTCGTTTTCACAATTTCCCTTTAGTGGTGCCTAAATTTTTTTGGA
AAAATAAATTTGATAAGAAATTAATTGAGCAAAGAAATAGTGGCTTTCCTCTTCTTATTTTTGCTGCTGAAATTGAATTT
GGACAAGAATTTGCAAAACAACTACAATTGAAATTTCCTAAAGAAAAAATTGCTTCCGTTGCTTCAACAACAAAAGATAG
ATTGGAAATTGTTAAAGCTTTTAGAAATAAAGAAATTACTATTTTAATAGCGACTTCAATTCTTGAACGGGGAGTCACTT
TTCCAAATGTTGATGTTTTTGTCATCAACAGTGAGCACCCAAACTTCACTAAATCCGCACTGATACAAATGGCTGGACGT
GTGGGTCGTAGTCCTGAACGTCCAACAGGCTTAGTTAGTTTTTTTCATTACGGAAAATCCAAAGCAATGTGTCAGGCAGT
TAGAGAAATCAAAAAAATGAACCAACTGTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(300-403)

Type III restriction enzyme, res subunit (ResIII)

(114-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

74.307

91.055

0.677
  comFA/cflA Streptococcus mitis SK321

52.284

90.367

0.472
  comFA/cflA Streptococcus pneumoniae Rx1

52.284

90.367

0.472
  comFA/cflA Streptococcus pneumoniae D39

52.284

90.367

0.472
  comFA/cflA Streptococcus pneumoniae R6

52.284

90.367

0.472
  comFA/cflA Streptococcus pneumoniae TIGR4

52.284

90.367

0.472
  comFA/cflA Streptococcus mitis NCTC 12261

51.523

90.367

0.466
  comFA Bacillus subtilis subsp. subtilis str. 168

37.416

100

0.385

Multiple sequence alignment