Detailed information NTG0936779

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: ACEPM4_RS08395
• Genome accession: NZ_CP168733
• Coordinates: 1827170..1827823 (-)
• Length: 217 a.a.
• NCBI ID: WP_003267806.1
• Uniprot ID: Q8XYP7
• Organism: Ralstonia pseudosolanacearum strain RUN5935
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1822170..1832823

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPM4_RS08365 (ACEPM4_08365)	-	1822294..1822419 (+)	126	WP_354536312.1	hypothetical protein	-
ACEPM4_RS08380 (ACEPM4_08380)	-	1822693..1822965 (-)	273	WP_003267811.1	HU family DNA-binding protein	-
ACEPM4_RS08385 (ACEPM4_08385)	lon	1823139..1825559 (-)	2421	WP_011001653.1	endopeptidase La	-
ACEPM4_RS08390 (ACEPM4_08390)	clpX	1825730..1827004 (-)	1275	WP_011001652.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
ACEPM4_RS08395 (ACEPM4_08395)	clpP	1827170..1827823 (-)	654	WP_003267806.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
ACEPM4_RS08400 (ACEPM4_08400)	tig	1827853..1829202 (-)	1350	WP_016721979.1	trigger factor	-
ACEPM4_RS08405 (ACEPM4_08405)	mnmC	1829457..1831430 (-)	1974	WP_354536311.1	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	-
ACEPM4_RS08410 (ACEPM4_08410)	-	1831502..1831696 (-)	195	WP_011001649.1	hypothetical protein	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 23756.26 Da
• Isoelectric Point: 5.1001

>NTDB_id=936779 ACEPM4_RS08395 WP_003267806.1 1827170..1827823(-) (clpP) [Ralstonia pseudosolanacearum strain RUN5935]
MIRNELIDQLARTQASALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDK
DISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMIHQPLGGARGQASDIEI
QAREILYLRERLNTILSEVTGQPVDKIARDTDRDNFMSGDQAKEYGLIDKVLARRGA

Nucleotide

• Length: 654 bp

>NTDB_id=936779 ACEPM4_RS08395 WP_003267806.1 1827170..1827823(-) (clpP) [Ralstonia pseudosolanacearum strain RUN5935]
ATGATCCGCAATGAACTGATCGACCAACTCGCCCGCACCCAGGCTTCCGCGCTTGAAACGCAGGGCCTCGGACTGGTGCC
GATGGTGGTCGAGCAGTCGGGCCGCGGCGAACGCGCCTACGACATCTACTCGCGTCTGCTCAAGGAGCGCGTGATTTTCA
TGGTGGGCGAGGTCAACGACCAGACTGCCAATCTCGTGGTGGCGCAGTTGCTGTTCCTGGAGAGCGAGAATCCGGACAAG
GACATCTCGCTGTACATCAACTCGCCGGGCGGTTCGGTGTCGGCGGGCCTGGCGATGTACGACACGATGCAGTTCGTCAA
GCCCGACGTGTCCACGTTGTGCATGGGCATGGCCGCCAGCATGGGCGCGTTCCTGCTGGCCGCCGGCGCAAAGGGCAAGC
GCTATGCGCTGCCGAACTCGCGGATCATGATCCACCAGCCGCTGGGCGGCGCGCGCGGCCAGGCCTCGGATATCGAGATC
CAGGCGCGTGAAATCCTGTACCTGCGCGAACGTCTGAACACGATCCTGTCCGAAGTCACCGGCCAGCCCGTGGACAAGAT
CGCCCGCGATACGGACCGCGACAATTTCATGAGCGGCGATCAGGCCAAGGAGTACGGCCTGATCGACAAGGTGCTGGCTC
GGCGGGGTGCCTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (35-214)

3D structure

• AlphaFold DB: Q8XYP7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.708	88.479	0.599
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.368	87.558	0.59
clpP	Streptococcus pneumoniae Rx1	53.368	88.94	0.475
clpP	Streptococcus pneumoniae D39	53.368	88.94	0.475
clpP	Streptococcus pneumoniae R6	53.368	88.94	0.475
clpP	Streptococcus pneumoniae TIGR4	53.368	88.94	0.475
clpP	Lactococcus lactis subsp. cremoris KW2	53.684	87.558	0.47
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.105	87.558	0.456
clpP	Streptococcus thermophilus LMG 18311	51.295	88.94	0.456
clpP	Streptococcus thermophilus LMD-9	51.295	88.94	0.456
clpP	Streptococcus mutans UA159	51.309	88.018	0.452
clpP	Streptococcus pyogenes JRS4	51.579	87.558	0.452
clpP	Streptococcus pyogenes MGAS315	51.579	87.558	0.452