Detailed information NTG0936592

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: ACEPM3_RS08920
• Genome accession: NZ_CP168727
• Coordinates: 1902861..1903514 (-)
• Length: 217 a.a.
• NCBI ID: WP_003267806.1
• Uniprot ID: Q8XYP7
• Organism: Ralstonia pseudosolanacearum strain RUN6499
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1897861..1908514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPM3_RS08890 (ACEPM3_08890)	-	1897985..1898110 (+)	126	WP_257784642.1	hypothetical protein	-
ACEPM3_RS08905 (ACEPM3_08905)	-	1898384..1898656 (-)	273	WP_003267811.1	HU family DNA-binding protein	-
ACEPM3_RS08910 (ACEPM3_08910)	lon	1898830..1901250 (-)	2421	WP_011001653.1	endopeptidase La	-
ACEPM3_RS08915 (ACEPM3_08915)	clpX	1901421..1902695 (-)	1275	WP_011001652.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
ACEPM3_RS08920 (ACEPM3_08920)	clpP	1902861..1903514 (-)	654	WP_003267806.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
ACEPM3_RS08925 (ACEPM3_08925)	tig	1903544..1904893 (-)	1350	WP_011001651.1	trigger factor	-
ACEPM3_RS08930 (ACEPM3_08930)	mnmC	1905148..1907121 (-)	1974	WP_119918655.1	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	-
ACEPM3_RS08935 (ACEPM3_08935)	-	1907193..1907387 (-)	195	WP_011001649.1	hypothetical protein	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 23756.26 Da
• Isoelectric Point: 5.1001

>NTDB_id=936592 ACEPM3_RS08920 WP_003267806.1 1902861..1903514(-) (clpP) [Ralstonia pseudosolanacearum strain RUN6499]
MIRNELIDQLARTQASALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDK
DISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMIHQPLGGARGQASDIEI
QAREILYLRERLNTILSEVTGQPVDKIARDTDRDNFMSGDQAKEYGLIDKVLARRGA

Nucleotide

• Length: 654 bp

>NTDB_id=936592 ACEPM3_RS08920 WP_003267806.1 1902861..1903514(-) (clpP) [Ralstonia pseudosolanacearum strain RUN6499]
ATGATCCGCAATGAACTGATCGACCAACTCGCCCGCACCCAGGCTTCCGCGCTTGAAACGCAGGGCCTCGGACTGGTGCC
GATGGTGGTCGAGCAGTCGGGCCGCGGCGAACGCGCCTACGACATCTACTCGCGTCTGCTCAAGGAGCGCGTGATTTTCA
TGGTGGGCGAGGTCAACGACCAGACTGCCAATCTCGTGGTGGCGCAGTTGCTGTTCCTGGAGAGCGAGAATCCGGACAAG
GACATCTCGCTGTACATCAACTCGCCGGGCGGTTCGGTGTCGGCGGGCCTGGCGATGTACGACACGATGCAGTTTGTCAA
GCCCGACGTGTCCACGTTGTGCATGGGCATGGCCGCCAGCATGGGCGCGTTCCTGCTGGCCGCCGGCGCGAAGGGCAAGC
GCTATGCGCTGCCGAACTCGCGGATCATGATTCACCAGCCGCTGGGCGGTGCGCGCGGCCAGGCCTCGGATATCGAGATC
CAGGCGCGTGAAATCCTGTACCTGCGCGAACGTCTGAACACGATCCTGTCCGAAGTCACCGGCCAGCCCGTGGACAAGAT
CGCCCGCGATACGGACCGCGACAATTTCATGAGCGGCGATCAGGCCAAGGAGTACGGCCTGATCGACAAGGTGCTGGCTC
GGCGGGGTGCCTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (35-214)

3D structure

• AlphaFold DB: Q8XYP7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.708	88.479	0.599
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.368	87.558	0.59
clpP	Streptococcus pneumoniae Rx1	53.368	88.94	0.475
clpP	Streptococcus pneumoniae D39	53.368	88.94	0.475
clpP	Streptococcus pneumoniae R6	53.368	88.94	0.475
clpP	Streptococcus pneumoniae TIGR4	53.368	88.94	0.475
clpP	Lactococcus lactis subsp. cremoris KW2	53.684	87.558	0.47
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.105	87.558	0.456
clpP	Streptococcus thermophilus LMG 18311	51.295	88.94	0.456
clpP	Streptococcus thermophilus LMD-9	51.295	88.94	0.456
clpP	Streptococcus mutans UA159	51.309	88.018	0.452
clpP	Streptococcus pyogenes JRS4	51.579	87.558	0.452
clpP	Streptococcus pyogenes MGAS315	51.579	87.558	0.452