Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   V3H56_RS02020 Genome accession   NZ_CP144763
Coordinates   467900..469996 (+) Length   698 a.a.
NCBI ID   WP_123579406.1    Uniprot ID   -
Organism   Pseudomonas sp. MS646     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 462900..474996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H56_RS02000 (V3H56_02000) comM 465111..466175 (+) 1065 WP_123579405.1 pilus assembly protein PilM Machinery gene
  V3H56_RS02005 (V3H56_02005) - 466175..466741 (+) 567 WP_042731989.1 PilN domain-containing protein -
  V3H56_RS02010 (V3H56_02010) pilO 466738..467361 (+) 624 WP_338474161.1 type 4a pilus biogenesis protein PilO -
  V3H56_RS02015 (V3H56_02015) - 467358..467903 (+) 546 WP_047736133.1 pilus assembly protein PilP -
  V3H56_RS02020 (V3H56_02020) pilQ 467900..469996 (+) 2097 WP_123579406.1 type IV pilus secretin PilQ Machinery gene
  V3H56_RS02025 (V3H56_02025) aroK 470001..470519 (+) 519 WP_042731985.1 shikimate kinase AroK -
  V3H56_RS02030 (V3H56_02030) aroB 470664..471764 (+) 1101 WP_042731984.1 3-dehydroquinate synthase -
  V3H56_RS02035 (V3H56_02035) - 471775..473352 (+) 1578 WP_338474162.1 AAA family ATPase -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 75080.37 Da        Isoelectric Point: 5.4030

>NTDB_id=934794 V3H56_RS02020 WP_123579406.1 467900..469996(+) (pilQ) [Pseudomonas sp. MS646]
MNRIFSAFGVSLGIALLSPMVHGAGLKTLDVAALPGDRVELKLSFDGPPPTPRGYTTEQPARIALDLPGVTNQLASKSHD
LGGGNARSATVVEAGDRTRLIIGLTQLAPYNTRIEGNNLFVVVGKGAVPAITPATVPAPAAAAPRPALASAAPVKARAPA
GKAIRGVDFQRGTQGEGNVVIDLSDPAIAPDIQEREGKIILNFARTQLPEPLRVRLDVKDFATPVQFVNASAGTDRATIS
IEPSGTFDYSTYQTDNKLTVSVRPMTVEDLQKRNADRAAYSGEKLSLNFQDIEVRSVLQLIADFTNLNLVASDTVQGGIT
LRLQNVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFQSV
TSAEAKADERGTITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKNLGVRWGGSIQNQGNWN
SSGVTSGTSTTIGTPGSTGTNQPFVDMGVSGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILK
GTEIPYQEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQEVPPIKKNEVNAKVLVNDGETIVI
GGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=934794 V3H56_RS02020 WP_123579406.1 467900..469996(+) (pilQ) [Pseudomonas sp. MS646]
ATGAACAGGATTTTTTCAGCCTTTGGTGTTTCGCTAGGGATAGCGCTCTTATCACCGATGGTTCATGGGGCCGGCCTGAA
GACCCTGGACGTGGCGGCGCTGCCGGGCGACCGCGTCGAATTGAAACTCTCCTTCGACGGGCCGCCGCCGACGCCGCGGG
GCTACACCACCGAACAGCCGGCGCGGATCGCCCTGGACCTGCCGGGCGTCACCAATCAACTGGCGAGCAAGAGCCATGAC
CTGGGCGGCGGCAATGCCCGCAGCGCCACCGTGGTCGAAGCAGGGGATCGCACCCGGCTGATCATAGGGCTGACTCAGTT
GGCGCCGTATAACACCCGCATCGAGGGTAACAACCTGTTCGTGGTGGTGGGCAAGGGCGCGGTTCCTGCGATAACCCCTG
CGACAGTCCCCGCGCCGGCCGCCGCGGCGCCGCGCCCGGCGCTGGCCAGTGCGGCCCCGGTGAAGGCCCGCGCGCCGGCG
GGCAAGGCGATTCGCGGGGTGGACTTCCAGCGCGGCACCCAGGGCGAGGGCAATGTCGTGATCGACTTGTCCGACCCCGC
CATCGCGCCGGATATCCAGGAGCGTGAAGGCAAGATCATCCTCAATTTCGCCCGCACGCAGCTGCCCGAACCCCTGCGGG
TGCGCCTGGATGTGAAGGATTTCGCCACCCCGGTGCAGTTCGTCAATGCCAGTGCCGGCACCGACCGGGCGACGATCAGC
ATCGAGCCCAGTGGCACCTTCGATTATTCGACCTACCAGACCGACAACAAGCTCACCGTCAGCGTTCGGCCCATGACCGT
CGAGGACTTGCAAAAGCGCAATGCCGATCGCGCTGCCTACAGTGGTGAAAAGCTTTCCCTCAACTTCCAGGACATCGAGG
TGCGCTCGGTCCTGCAACTGATTGCCGATTTCACCAACCTGAACCTGGTGGCGAGCGACACGGTGCAGGGTGGCATCACC
CTGCGGTTGCAGAATGTGCCGTGGGACCAGGCGCTGGACCTGGTGCTCAAGACCAAGGGCCTGGACAAGCGCAAGGTCGG
CAACGTGCTGCTGGTGGCGCCGGCCGACGAGATTGCGGCGCGTGAGCGCCAGGAGCTCGAATCCCAGAAGCAGATTGCCG
ACCTGGCGCCGCTGCGCCGGGAGCTGCTGCAGGTCAACTATGCCAAGGCCGCGGACATCGCCAAGCTGTTCCAGTCGGTG
ACCAGCGCCGAGGCCAAGGCCGATGAGCGTGGCACGATCACGGTCGATGAGCGCACCAACAACATCATTGCCTACCAGAC
CCAGGACCGGCTCGACGAGTTGCGTCGGATCGTCGCGCAGTTGGATATCCCGGTGCGTCAGGTAATGATCGAGGCCCGGA
TCGTCGAGGCCAACGTCGACTACGACAAGAACCTGGGCGTTCGCTGGGGCGGTTCGATACAGAACCAGGGCAACTGGAAC
TCTTCCGGGGTCACGTCCGGGACTTCCACGACCATCGGCACGCCGGGGAGTACGGGCACCAACCAGCCGTTCGTCGACAT
GGGTGTGTCAGGCAACACCTCGGGGATCGGCATTGCGTTCATCACCGACAACGTCCTGCTGGACCTGGAATTGACGGCGA
TGGAGAAAACCGGCAACGGCGAAATCGTTTCCCAGCCCAAGGTCGTGACCTCCGACAAGGAGACGGCGAAGATCCTCAAG
GGCACGGAAATTCCCTACCAGGAAGCCAGCTCCAGTGGTGCTACCTCGGTGTCGTTCAAGGAGGCCTCGCTATCGCTGGA
AGTCACTCCGCAGATCACGCCGGACAACCGCATCATCATGGAGGTCAAGGTCACCAAGGATGAGCCCGACTACCTGAACA
AGGTGCAGGAGGTGCCGCCGATCAAGAAAAACGAGGTCAATGCCAAGGTGCTGGTCAACGACGGCGAGACCATTGTGATT
GGCGGGGTTTTCTCGAATACTCAGAGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCT
TTTCCGGCGTGATGTGGTCTCGGAGAAAAAATCCGAGCTGCTGGTGTTCCTCACTCCGCGTATCATGAACAACCAGGCGA
TTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(382-447)

AMIN domain (AMIN)

(37-121)

Bacterial type II and III secretion system protein (Secretin)

(533-689)

Secretin and TonB N terminus short domain (STN)

(308-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.284

100

0.744
  comQ Acinetobacter baylyi ADP1

41.774

100

0.418
  pilQ Acinetobacter baumannii strain A118

38.349

100

0.413
  pilQ Acinetobacter baumannii D1279779

38.349

100

0.413
  pilQ Legionella pneumophila strain ERS1305867

38.235

97.421

0.372
  pilQ Legionella pneumophila strain Lp02

38.235

97.421

0.372