Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V3H56_RS02000 Genome accession   NZ_CP144763
Coordinates   465111..466175 (+) Length   354 a.a.
NCBI ID   WP_123579405.1    Uniprot ID   -
Organism   Pseudomonas sp. MS646     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 460111..471175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H56_RS01990 (V3H56_01990) - 461049..462317 (+) 1269 WP_042731496.1 malic enzyme-like NAD(P)-binding protein -
  V3H56_RS01995 (V3H56_01995) - 462459..464906 (-) 2448 WP_042731495.1 penicillin-binding protein 1A -
  V3H56_RS02000 (V3H56_02000) comM 465111..466175 (+) 1065 WP_123579405.1 pilus assembly protein PilM Machinery gene
  V3H56_RS02005 (V3H56_02005) - 466175..466741 (+) 567 WP_042731989.1 PilN domain-containing protein -
  V3H56_RS02010 (V3H56_02010) pilO 466738..467361 (+) 624 WP_338474161.1 type 4a pilus biogenesis protein PilO -
  V3H56_RS02015 (V3H56_02015) - 467358..467903 (+) 546 WP_047736133.1 pilus assembly protein PilP -
  V3H56_RS02020 (V3H56_02020) pilQ 467900..469996 (+) 2097 WP_123579406.1 type IV pilus secretin PilQ Machinery gene
  V3H56_RS02025 (V3H56_02025) aroK 470001..470519 (+) 519 WP_042731985.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38226.74 Da        Isoelectric Point: 4.8313

>NTDB_id=934793 V3H56_RS02000 WP_123579405.1 465111..466175(+) (comM) [Pseudomonas sp. MS646]
MLRLFNKKTHALLGIDISSTSVKLLELSRQGERYRVESYAVEPLPANAVVEKNIAELEGVGLALSRVLVKARTPVRSVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKIEADQYIPYPLDEVAIDFEVQGVSPRSDERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQERLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTP
EQAGLAKKQGGLPDDYVGEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVTGLDRLIEQRLGTPTQVANP
FTNMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=934793 V3H56_RS02000 WP_123579405.1 465111..466175(+) (comM) [Pseudomonas sp. MS646]
GTGCTACGACTCTTCAATAAAAAAACCCATGCACTTCTGGGGATCGACATCAGTTCAACGTCGGTGAAGCTGCTGGAGTT
GAGCCGCCAGGGCGAGCGCTACCGCGTCGAGTCCTACGCGGTGGAACCGCTGCCGGCCAATGCCGTGGTCGAGAAGAACA
TCGCCGAACTCGAAGGCGTAGGCCTGGCGTTGTCACGGGTTCTGGTCAAGGCCAGGACGCCCGTGCGCAGCGTGGCGGTG
GCCGTGGCGGGGTCGGCGGTGATCACCAAGACCATCGAGATGGACGCCGGCCTGTCCGACGACGACATGGAAAACCAGCT
CAAGATCGAGGCCGACCAATACATTCCCTATCCGCTGGATGAAGTGGCCATCGACTTCGAGGTCCAGGGCGTGTCGCCGC
GCAGTGACGAGCGGGTCGAAGTGCTGCTGGCGGCCTGTCGCAAGGAAAACGTCGAGGTCCGCGAGGCCGCGCTGGCGCTG
GCCGGGCTGACGGCCCGGGTGGTGGACGTGGAGGCCTATGCGCTGGAGCGTTCGTTCGGCCTGCTCGCCACGCAACTGGC
TGCCTCCCAGGAGCGCCTGACCGTGGCGGTGGTCGACATCGGCGCGACCATGACCACCCTGAGCGTCCTGCACAACGGGC
GCATCATCTATACCCGCGAACAATTGTTCGGTGGCCGCCAGCTCACCGAGGAAATCCAGCGCCGCTATGGCCTGACGCCC
GAGCAAGCCGGCCTGGCGAAGAAGCAGGGCGGCCTGCCCGACGATTATGTCGGCGAGGTGCTGCAACCCTTTCGCGAGGC
GCTGGTGCAGCAGGTGTCGCGTTCCTTGCAGTTTTTCTTCGCCTCGGGCCAGTACAACGCGGTGGACCATATCCTGCTGG
CCGGCGGCACGGCCTCGGTCACCGGTCTGGACCGACTGATCGAACAGCGCCTGGGCACGCCGACCCAGGTGGCCAACCCG
TTCACCAACATGGCCCTGAGCAGCAAGGTCAATGCCGGTGCGCTGGCCAGTGACGCGCCGGCACTCATGATCGCGTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

47.458

100

0.475