NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	VXF94_RS14000	Genome accession	NZ_CP143956
Coordinates	2752721..2753317 (-)	Length	198 a.a.
NCBI ID	WP_003151513.1	Uniprot ID	I2CAH7
Organism	Bacillus amyloliquefaciens strain Fad 108
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2747721..2758317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VXF94_RS13980 (VXF94_13980)	-	2748074..2748913 (-)	840	WP_014471069.1	hypothetical protein	-
VXF94_RS13985 (VXF94_13985)	-	2749096..2750472 (-)	1377	WP_013353714.1	MFS transporter	-
VXF94_RS13990 (VXF94_13990)	-	2750516..2751646 (-)	1131	WP_013353713.1	2-methylaconitate cis-trans isomerase PrpF family protein	-
VXF94_RS13995 (VXF94_13995)	-	2751818..2752678 (+)	861	WP_013353712.1	LysR family transcriptional regulator	-
VXF94_RS14000 (VXF94_14000)	clpP	2752721..2753317 (-)	597	WP_003151513.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
VXF94_RS14005 (VXF94_14005)	-	2753596..2754570 (-)	975	WP_014471068.1	LacI family DNA-binding transcriptional regulator	-
VXF94_RS14010 (VXF94_14010)	-	2754946..2756178 (+)	1233	WP_013353710.1	MFS transporter	-
VXF94_RS14015 (VXF94_14015)	-	2756193..2757662 (+)	1470	WP_014472286.1	glycoside hydrolase family 32 protein	-
VXF94_RS14025 (VXF94_14025)	-	2757973..2758284 (-)	312	WP_013353708.1	hypothetical protein	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21831.06 Da Isoelectric Point: 4.6982

                                >NTDB_id=932221 VXF94_RS14000 WP_003151513.1 2752721..2753317(-) (clpP) [Bacillus amyloliquefaciens strain Fad 108]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ

PLEVIERDTDRDNFKSADEALEYGLIDKVLTRNTEDQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=932221 VXF94_RS14000 WP_003151513.1 2752721..2753317(-) (clpP) [Bacillus amyloliquefaciens strain Fad 108]

ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGAGAAAGAGCTTATGACATTTACTCCCGTCTTTTGAAGGA

CCGTATTATCATGCTTGGATCTGCGATTGATGACAACGTTGCAAACTCCATCGTGTCACAGCTTTTATTCCTTGAAGCGG

AAGACCCTGAAAAAGATATTTCCATTTACATTAACAGCCCTGGCGGATCAATCACTGCCGGTATGGCAATCTATGATACA

ATGCAGTTCATTAAACCGAAAGTATCCACGATCTGCATCGGTATGGCCGCTTCTATGGGAGCATTCTTACTTGCTGCCGG

AGAAAAAGGCAAACGTTACGCGCTTCCTAACAGTGAAGTCATGATTCACCAGCCGCTTGGCGGAGCGCAAGGACAGGCGA

CTGAAATTGAAATCGCTGCTAAACGCATTCTCTTGCTTCGCGATAAATTAAACAAAGTGCTTGCTGAACGTACCGGCCAG

CCGCTTGAAGTGATCGAGCGCGACACGGACCGCGACAACTTCAAATCAGCTGATGAAGCTTTAGAATACGGCTTAATCGA

TAAAGTGCTGACACGCAATACGGAAGACCAGAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	I2CAH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	95.96	100	0.96
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.586	96.465	0.662
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Streptococcus pneumoniae D39	57.216	97.98	0.561
clpP	Streptococcus pneumoniae Rx1	57.216	97.98	0.561
clpP	Streptococcus pneumoniae R6	57.216	97.98	0.561
clpP	Streptococcus pneumoniae TIGR4	57.216	97.98	0.561
clpP	Lactococcus lactis subsp. cremoris KW2	56.701	97.98	0.556
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.639	97.98	0.535
clpP	Streptococcus mutans UA159	54.639	97.98	0.535

Detailed information NTG0932221