Detailed information NTG0931504

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: U6C02_RS08315
• Genome accession: NZ_CP143843
• Coordinates: 1606732..1607328 (-)
• Length: 198 a.a.
• NCBI ID: WP_003151513.1
• Uniprot ID: I2CAH7
• Organism: Bacillus velezensis strain YM-3
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1601732..1612328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U6C02_RS08290 (U6C02_08290)	-	1601885..1602205 (-)	321	WP_003151506.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
U6C02_RS08295 (U6C02_08295)	-	1602321..1602896 (+)	576	WP_015387658.1	TIGR00730 family Rossman fold protein	-
U6C02_RS08300 (U6C02_08300)	-	1603105..1604481 (-)	1377	WP_014305894.1	MFS transporter	-
U6C02_RS08305 (U6C02_08305)	-	1604524..1605654 (-)	1131	WP_060387178.1	2-methylaconitate cis-trans isomerase PrpF family protein	-
U6C02_RS08310 (U6C02_08310)	-	1605828..1606688 (+)	861	WP_003151510.1	LysR family transcriptional regulator	-
U6C02_RS08315 (U6C02_08315)	clpP	1606732..1607328 (-)	597	WP_003151513.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
U6C02_RS08320 (U6C02_08320)	-	1607576..1608550 (-)	975	WP_024085838.1	LacI family DNA-binding transcriptional regulator	-
U6C02_RS08325 (U6C02_08325)	-	1608940..1610172 (+)	1233	WP_003151517.1	MFS transporter	-
U6C02_RS08330 (U6C02_08330)	-	1610187..1611656 (+)	1470	WP_154303048.1	glycoside hydrolase family 32 protein	-
U6C02_RS08340 (U6C02_08340)	-	1612005..1612316 (-)	312	WP_003151521.1	hypothetical protein	-

Sequence

Protein

• Length: 198 a.a.
• Molecular weight: 21831.06 Da
• Isoelectric Point: 4.6982

>NTDB_id=931504 U6C02_RS08315 WP_003151513.1 1606732..1607328(-) (clpP) [Bacillus velezensis strain YM-3]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSADEALEYGLIDKVLTRNTEDQK

Nucleotide

• Length: 597 bp

>NTDB_id=931504 U6C02_RS08315 WP_003151513.1 1606732..1607328(-) (clpP) [Bacillus velezensis strain YM-3]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGAGAAAGAGCTTATGACATTTACTCCCGTCTTTTGAAGGA
CCGTATTATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCCTTGAAGCGG
AAGACCCTGAAAAAGATATTTCCATTTACATTAACAGCCCTGGCGGATCAATCACTGCCGGTATGGCAATCTATGATACA
ATGCAGTTCATTAAACCGAAAGTATCCACGATCTGCATCGGTATGGCCGCTTCTATGGGAGCATTTTTACTTGCAGCCGG
AGAAAAAGGCAAACGTTACGCGCTTCCTAACAGTGAAGTTATGATTCACCAGCCGCTTGGCGGAGCGCAAGGACAGGCGA
CAGAAATTGAAATCGCCGCAAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTGCTTGCTGAACGTACCGGCCAG
CCGCTTGAAGTCATTGAGCGCGATACAGACCGCGACAACTTCAAATCAGCTGATGAAGCTTTAGAATACGGCTTAATCGA
TAAAGTGCTGACACGCAATACGGAAGACCAGAAGTAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (13-192)

3D structure

• AlphaFold DB: I2CAH7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	95.96	100	0.96
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.586	96.465	0.662
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Streptococcus pneumoniae D39	57.216	97.98	0.561
clpP	Streptococcus pneumoniae Rx1	57.216	97.98	0.561
clpP	Streptococcus pneumoniae R6	57.216	97.98	0.561
clpP	Streptococcus pneumoniae TIGR4	57.216	97.98	0.561
clpP	Lactococcus lactis subsp. cremoris KW2	56.701	97.98	0.556
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.639	97.98	0.535
clpP	Streptococcus mutans UA159	54.639	97.98	0.535