Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   ACB342_RS01595 Genome accession   NZ_CP167007
Coordinates   296143..296694 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 24     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 291143..301694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB342_RS01595 (ACB342_01600) comX/sigX/comX2/sigX2 296143..296694 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACB342_RS01600 (ACB342_01605) - 297305..298427 (+) 1123 Protein_260 ISAs1-like element IS1548 family transposase -
  ACB342_RS01605 (ACB342_01610) - 298590..299117 (+) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  ACB342_RS01610 (ACB342_01615) yqeH 299117..300235 (+) 1119 WP_002991828.1 ribosome biogenesis GTPase YqeH -
  ACB342_RS01615 (ACB342_01620) yhbY 300260..300568 (+) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  ACB342_RS01620 (ACB342_01625) - 300637..301269 (+) 633 WP_010921896.1 nicotinate-nucleotide adenylyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=930227 ACB342_RS01595 WP_010921894.1 296143..296694(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain Isolate 24]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=930227 ACB342_RS01595 WP_010921894.1 296143..296694(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain Isolate 24]
ATGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.