Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   ACB354_RS04060 Genome accession   NZ_CP167004
Coordinates   735299..735481 (+) Length   60 a.a.
NCBI ID   WP_011184726.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 28     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context


Location: 730299..740481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB354_RS04030 (ACB354_04030) - 730527..730982 (+) 456 WP_011184730.1 phage holin family protein -
  ACB354_RS04035 (ACB354_04035) - 731100..731309 (+) 210 WP_011184729.1 hypothetical protein -
  ACB354_RS04040 (ACB354_04040) - 731348..732979 (+) 1632 Protein_735 IS1182 family transposase -
  ACB354_RS04045 (ACB354_04045) - 733139..733414 (+) 276 WP_371399129.1 SH3 domain-containing protein -
  ACB354_RS04050 (ACB354_04050) speC 733483..734190 (-) 708 WP_002985327.1 streptococcal pyrogenic exotoxin SpeC -
  ACB354_RS04055 (ACB354_04055) mf2 734301..735059 (-) 759 WP_011184727.1 DNase Mf2 -
  ACB354_RS04060 (ACB354_04060) prx 735299..735481 (+) 183 WP_011184726.1 hypothetical protein Regulator
  ACB354_RS04065 (ACB354_04065) - 736012..737874 (+) 1863 WP_011184725.1 heavy metal translocating P-type ATPase -
  ACB354_RS04070 (ACB354_04070) - 738174..739109 (-) 936 WP_010922443.1 dihydroorotate oxidase -
  ACB354_RS04075 (ACB354_04075) - 739348..740043 (+) 696 WP_002983928.1 phosphoglycerate mutase -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6936.91 Da        Isoelectric Point: 4.1954

>NTDB_id=929972 ACB354_RS04060 WP_011184726.1 735299..735481(+) (prx) [Streptococcus pyogenes strain Isolate 28]
MLTYDEFKQAIDNGYITADTVMIVRKNGQIFDYVLPNEKIKNGEIVTDEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=929972 ACB354_RS04060 WP_011184726.1 735299..735481(+) (prx) [Streptococcus pyogenes strain Isolate 28]
ATGCTAACATACGACGAATTTAAACAAGCAATTGACAATGGATATATCACAGCAGACACAGTAATGATCGTGCGCAAGAA
CGGACAGATTTTTGATTATGTGTTGCCGAATGAGAAGATAAAGAATGGAGAAATTGTGACAGACGAAAAAGTGGAAGAGG
TGCTGGTGGAGCTTTCGAGATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

98.333

100

0.983

  prx Streptococcus pyogenes MGAS8232

86.667

100

0.867

  prx Streptococcus pyogenes MGAS315

78.333

100

0.783

  prx Streptococcus pyogenes MGAS315

75

100

0.75

  prx Streptococcus pyogenes MGAS315

83.721

71.667

0.6

  prx Streptococcus pyogenes MGAS315

85.366

68.333

0.583

  prx Streptococcus pyogenes MGAS315

71.429

70

0.5