Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V1500_RS24780 Genome accession   NZ_CP143547
Coordinates   5095771..5096262 (-) Length   163 a.a.
NCBI ID   WP_409303531.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-155     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5090771..5101262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1500_RS24760 (V1500_24760) rplI 5091589..5092038 (-) 450 WP_409303526.1 50S ribosomal protein L9 -
  V1500_RS24765 (V1500_24765) - 5092035..5094008 (-) 1974 WP_409303527.1 DHH family phosphoesterase -
  V1500_RS24770 (V1500_24770) - 5094055..5095011 (-) 957 WP_409303529.1 YybS family protein -
  V1500_RS24775 (V1500_24775) rpsR 5095480..5095716 (-) 237 WP_409306116.1 30S ribosomal protein S18 -
  V1500_RS24780 (V1500_24780) ssbA 5095771..5096262 (-) 492 WP_409303531.1 single-stranded DNA-binding protein Machinery gene
  V1500_RS24785 (V1500_24785) rpsF 5096319..5096606 (-) 288 WP_409303533.1 30S ribosomal protein S6 -
  V1500_RS24790 (V1500_24790) ychF 5096764..5097864 (-) 1101 WP_409303535.1 redox-regulated ATPase YchF -
  V1500_RS24795 (V1500_24795) - 5098122..5098319 (-) 198 WP_409303537.1 DUF951 domain-containing protein -
  V1500_RS24800 (V1500_24800) - 5098335..5099231 (-) 897 WP_409306117.1 mechanosensitive ion channel family protein -
  V1500_RS24805 (V1500_24805) yyaC 5099513..5100136 (+) 624 WP_409303539.1 spore protease YyaC -
  V1500_RS24810 (V1500_24810) - 5100294..5101007 (-) 714 WP_409303541.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18266.04 Da        Isoelectric Point: 4.8282

>NTDB_id=929637 V1500_RS24780 WP_409303531.1 5095771..5096262(-) (ssbA) [Peribacillus sp. SCS-155]
MMNRVILVGRLTKDPELRYTPNGVPVATFTLAVNRAFTNQSGEREADFINCVVWRKPAENVANYLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSFGNQRNNDYPGQNQNQRNNNYTRVDDDPFANDGKTIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=929637 V1500_RS24780 WP_409303531.1 5095771..5096262(-) (ssbA) [Peribacillus sp. SCS-155]
ATGATGAATCGCGTAATTTTAGTAGGGCGCTTAACGAAAGATCCTGAATTACGTTATACACCGAATGGAGTGCCTGTTGC
TACATTTACATTGGCTGTTAATCGTGCTTTCACGAACCAGTCAGGTGAGCGTGAAGCAGACTTTATCAATTGTGTAGTTT
GGCGCAAACCGGCAGAAAACGTTGCAAACTATCTTAAAAAAGGCAGCTTAGCAGGCGTGGACGGCCGCGTTCAAACACGC
AATTATGAAGGACAAGACGGCAAACGGGTATATGTGACAGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCAGGTGAAAGAAATGAAGGCGGCTCTTTTGGTAATCAAAGGAATAATGATTACCCTGGACAGAATCAGAATC
AACGCAACAACAACTACACTCGTGTAGATGACGATCCATTTGCAAATGACGGTAAAACGATCGACATTTCTGATGATGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.767

100

0.736
  ssb Latilactobacillus sakei subsp. sakei 23K

55.814

100

0.589
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

65.031

0.411
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.39

72.393

0.387
  ssb Glaesserella parasuis strain SC1401

33.696

100

0.38
  ssbB/cilA Streptococcus mitis NCTC 12261

50.427

71.779

0.362
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.427

71.779

0.362