NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	V1502_RS17875	Genome accession	NZ_CP143546
Coordinates	3625787..3626386 (+)	Length	199 a.a.
NCBI ID	WP_044022699.1	Uniprot ID	-
Organism	Bacillus sp. SCS-153A
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3620787..3631386

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V1502_RS17850 (V1502_17850)	-	3621486..3622508 (-)	1023	WP_409251944.1	sugar-binding transcriptional regulator	-
V1502_RS17855 (V1502_17855)	-	3622650..3622907 (-)	258	WP_409251945.1	glutaredoxin family protein	-
V1502_RS17860 (V1502_17860)	rpoN	3622900..3624186 (-)	1287	WP_409251946.1	RNA polymerase factor sigma-54	-
V1502_RS17865 (V1502_17865)	-	3624355..3625020 (-)	666	WP_409254385.1	DsbA family oxidoreductase	-
V1502_RS17875 (V1502_17875)	clpP	3625787..3626386 (+)	600	WP_044022699.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
V1502_RS17880 (V1502_17880)	-	3626904..3627161 (-)	258	WP_409251947.1	HPr family phosphocarrier protein	-
V1502_RS17885 (V1502_17885)	whiA	3627191..3628138 (-)	948	WP_409251948.1	DNA-binding protein WhiA	-
V1502_RS17890 (V1502_17890)	-	3628225..3629205 (-)	981	WP_409251949.1	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	-
V1502_RS17895 (V1502_17895)	rapZ	3629202..3630095 (-)	894	WP_409251950.1	RNase adapter RapZ	-
V1502_RS17900 (V1502_17900)	-	3630113..3630571 (-)	459	WP_006836860.1	NUDIX hydrolase	-

Sequence

Protein

Download Length: 199 a.a. Molecular weight: 21873.12 Da Isoelectric Point: 4.6452

                                >NTDB_id=929576 V1502_RS17875 WP_044022699.1 3625787..3626386(+) (clpP) [Bacillus sp. SCS-153A]

MNLIPTVIEQTNRGERAYDIYSRLLKDRVIMLGSGIDDNVANSIVAQLLFLESENPEKDISIYINSPGGSITAGMAIYDT

IQYIKPDVQTICIGMAASMGAFLLAAGAKGKRLALPNAEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILSDRTGQ

PLEVISKDTDRDNFMTAERALEYGLIDRIITSNEMNENK

Nucleotide

Download Length: 600 bp

                                >NTDB_id=929576 V1502_RS17875 WP_044022699.1 3625787..3626386(+) (clpP) [Bacillus sp. SCS-153A]

ATGAACTTAATTCCGACAGTTATTGAACAAACAAACCGCGGTGAGCGTGCGTACGACATATACTCCCGCTTGTTGAAAGA

CCGCGTTATCATGCTGGGAAGCGGCATTGATGATAATGTTGCCAACTCCATCGTTGCGCAATTGCTATTCCTTGAATCAG

AGAATCCTGAAAAAGATATTTCCATTTACATCAACAGCCCTGGCGGAAGCATCACAGCTGGTATGGCTATCTATGATACA

ATCCAGTACATCAAGCCTGACGTACAAACTATCTGTATCGGTATGGCTGCATCAATGGGTGCCTTCCTTCTCGCTGCAGG

GGCAAAAGGAAAGCGCCTTGCCCTTCCTAATGCTGAGGTCATGATCCATCAGCCGCTTGGAGGAGCACAAGGTCAAGCGA

CAGAAATCGAAATCGCTGCAAAGCGTATCTTGTTCTTGCGTGAAAAGCTGAACCAGATCCTTTCTGACCGTACTGGCCAG

CCCCTTGAAGTCATTTCAAAAGATACAGACCGTGACAACTTCATGACAGCGGAAAGAGCGCTTGAATACGGGTTGATCGA

CCGCATCATCACTAGCAACGAAATGAACGAAAATAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	84.536	97.487	0.824
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.553	94.472	0.638
clpP	Streptococcus thermophilus LMG 18311	58.462	97.99	0.573
clpP	Streptococcus thermophilus LMD-9	58.462	97.99	0.573
clpP	Lactococcus lactis subsp. cremoris KW2	57.949	97.99	0.568
clpP	Streptococcus mutans UA159	56.633	98.492	0.558
clpP	Streptococcus pneumoniae D39	56.122	98.492	0.553
clpP	Streptococcus pneumoniae Rx1	56.122	98.492	0.553
clpP	Streptococcus pneumoniae R6	56.122	98.492	0.553
clpP	Streptococcus pneumoniae TIGR4	56.122	98.492	0.553
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.897	97.99	0.548
clpP	Streptococcus pyogenes JRS4	55.385	97.99	0.543
clpP	Streptococcus pyogenes MGAS315	55.385	97.99	0.543

Detailed information NTG0929576