Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V1498_RS22045 Genome accession   NZ_CP143542
Coordinates   4390822..4391340 (-) Length   172 a.a.
NCBI ID   WP_409296359.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4385822..4396340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1498_RS22020 (V1498_22020) - 4386251..4388281 (-) 2031 WP_409296355.1 catalase -
  V1498_RS22025 (V1498_22025) - 4388384..4388617 (-) 234 WP_409296356.1 hypothetical protein -
  V1498_RS22030 (V1498_22030) - 4388787..4389809 (-) 1023 WP_409296357.1 serine hydrolase domain-containing protein -
  V1498_RS22035 (V1498_22035) - 4390147..4390323 (-) 177 WP_409296358.1 GNAT family N-acetyltransferase; N-acetyltransferase -
  V1498_RS22040 (V1498_22040) rpsR 4390540..4390776 (-) 237 WP_409293491.1 30S ribosomal protein S18 -
  V1498_RS22045 (V1498_22045) ssbA 4390822..4391340 (-) 519 WP_409296359.1 single-stranded DNA-binding protein Machinery gene
  V1498_RS22050 (V1498_22050) rpsF 4391398..4391685 (-) 288 WP_409296360.1 30S ribosomal protein S6 -
  V1498_RS22055 (V1498_22055) ychF 4392704..4393804 (-) 1101 WP_409296361.1 redox-regulated ATPase YchF -
  V1498_RS22060 (V1498_22060) - 4394001..4394558 (-) 558 WP_409296362.1 sugar O-acetyltransferase -
  V1498_RS22065 (V1498_22065) - 4394579..4394779 (-) 201 WP_409296363.1 DUF951 domain-containing protein -
  V1498_RS22070 (V1498_22070) - 4394801..4395685 (-) 885 WP_409296364.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19308.08 Da        Isoelectric Point: 4.8192

>NTDB_id=929439 V1498_RS22045 WP_409296359.1 4390822..4391340(-) (ssbA) [Peribacillus sp. SCS-26]
MMNRVILVGRLTKDPELRYTPNGVPVATFTLAVNRAFTNQQGEREADFINCVVWRKPAENVANYLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRNSNAGGGDRNEGGFYGGRQQESSYGQQNQNQNQPQRNNNNNYTRVDEDPFANNG
QTIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=929439 V1498_RS22045 WP_409296359.1 4390822..4391340(-) (ssbA) [Peribacillus sp. SCS-26]
ATGATGAACCGCGTTATTCTTGTGGGACGTTTAACAAAAGATCCAGAGCTGCGCTATACTCCAAACGGAGTGCCGGTTGC
AACTTTTACATTGGCTGTTAATCGTGCTTTTACTAACCAGCAGGGTGAACGTGAAGCGGACTTTATTAATTGTGTGGTAT
GGCGTAAACCAGCTGAGAATGTCGCAAACTACCTCAAAAAGGGAAGTTTGGCAGGCGTTGACGGCCGGGTCCAGACTCGC
AACTATGAAGGCCAGGATGGTAAGAGAGTATATGTCACTGAAATACTGGCTGAGAGCGTCCAATTTCTTGAACCTAGGAA
CAGCAATGCTGGCGGTGGAGATAGGAATGAAGGCGGGTTCTACGGCGGGCGCCAGCAGGAGTCCTCGTACGGACAGCAAA
ATCAAAATCAGAATCAACCACAACGAAACAACAACAATAACTATACACGCGTAGACGAAGATCCATTTGCGAATAACGGA
CAAACCATCGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.292

100

0.686
  ssb Latilactobacillus sakei subsp. sakei 23K

55.682

100

0.57
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

61.628

0.384
  ssb Neisseria meningitidis MC58

36.313

100

0.378
  ssb Neisseria gonorrhoeae MS11

36.313

100

0.378
  ssb Glaesserella parasuis strain SC1401

36.111

100

0.378
  ssb Vibrio cholerae strain A1552

34.239

100

0.366