Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VXM60_RS02190 Genome accession   NZ_CP143082
Coordinates   477442..478701 (-) Length   419 a.a.
NCBI ID   WP_126169205.1    Uniprot ID   -
Organism   Shewanella khirikhana strain JW44     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 472442..483701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXM60_RS02165 (VXM60_02165) mutT 474442..474837 (-) 396 WP_338591334.1 8-oxo-dGTP diphosphatase MutT -
  VXM60_RS02170 (VXM60_02170) yacG 474879..475094 (-) 216 WP_126169201.1 DNA gyrase inhibitor YacG -
  VXM60_RS02175 (VXM60_02175) zapD 475157..475891 (-) 735 WP_338591335.1 cell division protein ZapD -
  VXM60_RS02180 (VXM60_02180) coaE 475884..476501 (-) 618 WP_338591337.1 dephospho-CoA kinase -
  VXM60_RS02185 (VXM60_02185) pilD 476501..477415 (-) 915 WP_338591339.1 A24 family peptidase Machinery gene
  VXM60_RS02190 (VXM60_02190) pilC 477442..478701 (-) 1260 WP_126169205.1 type II secretion system F family protein Machinery gene
  VXM60_RS02195 (VXM60_02195) pilB 478736..480442 (-) 1707 WP_338591341.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VXM60_RS02200 (VXM60_02200) - 480499..481014 (-) 516 WP_338593437.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  VXM60_RS02205 (VXM60_02205) nadC 482327..483184 (-) 858 WP_338591343.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45991.30 Da        Isoelectric Point: 10.0960

>NTDB_id=928139 VXM60_RS02190 WP_126169205.1 477442..478701(-) (pilC) [Shewanella khirikhana strain JW44]
MATVAATKSKKAASKQQPKVYNFEWKGLNRDGKKSSGELRGTSVAEIKTILKNQGINPKLVRKKSEGLFGKGNKKINAMD
IAMITRQIATMLMAGVPLVTTIDILGKGHEKPKMRELLGTILNDIQAGIPLSDALRPHRIYFDDLYVDLVAAGEHSGSLD
VVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTTLLLLFVVPQFEDIFKSFGAELPAFTQMIINISRFLQSSWYF
FLTAIVASVWLYIRAHRNSQVVRDRQDEFVLKIPVIGDILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRK
ALLKIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGTLV
GGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=928139 VXM60_RS02190 WP_126169205.1 477442..478701(-) (pilC) [Shewanella khirikhana strain JW44]
ATGGCAACCGTGGCCGCGACCAAGTCAAAAAAAGCCGCCTCAAAACAGCAGCCCAAAGTGTATAACTTTGAATGGAAAGG
CTTAAACCGTGACGGTAAAAAGTCCAGTGGCGAGCTGAGAGGGACATCGGTTGCCGAAATTAAAACTATTCTGAAGAATC
AGGGCATTAATCCAAAATTAGTTCGAAAAAAATCTGAGGGTCTCTTCGGAAAAGGCAATAAAAAAATCAATGCGATGGAT
ATCGCTATGATCACCCGTCAAATAGCAACCATGCTAATGGCTGGCGTCCCTTTAGTGACGACCATCGATATTTTAGGAAA
AGGGCATGAAAAGCCTAAAATGAGAGAACTTTTAGGTACTATCTTAAATGATATCCAAGCTGGTATTCCTCTCTCCGATG
CTCTAAGACCTCACCGTATCTATTTTGATGATCTCTATGTTGACTTGGTAGCAGCAGGTGAGCATTCTGGTTCGCTGGAT
GTGGTATTCGACCGCATTGCCACATATAGAGAAAAAGCAGAGGCACTAAAATCAAAAATTAAGAAAGCTATGTTCTACCC
CGCCGCAGTTGTGGTAGTAGCCATTGCGGTAACAACCCTACTGCTACTTTTCGTAGTACCGCAATTTGAAGATATTTTTA
AGAGTTTTGGTGCAGAACTTCCAGCATTCACCCAAATGATCATTAATATCTCGAGGTTCCTGCAATCATCTTGGTATTTC
TTCCTCACCGCGATTGTCGCGTCAGTCTGGCTCTACATAAGGGCACACAGAAATTCTCAAGTTGTAAGGGATCGGCAAGA
CGAGTTTGTGTTAAAGATACCTGTAATCGGAGATATTTTACATAAAGCTGCCATGGCTCGTTTTGCCCGCACTCTTGCAA
CAACTTTTGCCGCTGGCGTGCCCTTGATTGATGGCTTGGAGTCTGCTGCAGGTGCTTCCGGTAACGCAGTTTACCGTAAA
GCGCTTTTAAAGATTCGCACAGAAGTCATGGCAGGGATGCAAATGAACGTCGCTATGCGCACGGTAAACCTTTTCCCAGA
CATGCTGATTCAGATGGTAATGATTGGTGAAGAGTCAGGCTCTCTTGATAATATGCTTAACAAAATCGCCAATATTTATG
AAATGCAAGTAGATGATGCTGTCGATGGTTTGTCGAGCCTGATTGAGCCTATCATGATGGTCGTAATTGGCACCTTGGTA
GGGGGATTAATCGTAGGCATGTACCTGCCGATCTTCCAGATGGGTAACGTGGTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(85-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.566

94.511

0.535
  pilC Acinetobacter baumannii D1279779

50.488

97.852

0.494
  pilC Acinetobacter baylyi ADP1

50.86

97.136

0.494
  pilC Legionella pneumophila strain ERS1305867

50.495

96.42

0.487
  pilC Vibrio cholerae strain A1552

46.115

95.227

0.439
  pilC Vibrio campbellii strain DS40M4

44.01

97.613

0.43
  pilG Neisseria meningitidis 44/76-A

41.584

96.42

0.401
  pilG Neisseria gonorrhoeae MS11

41.584

96.42

0.401