Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB8K37_RS12420 Genome accession   NZ_CP166186
Coordinates   2559293..2559916 (-) Length   207 a.a.
NCBI ID   WP_106490466.1    Uniprot ID   -
Organism   Escherichia coli strain CRE78     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2554293..2564916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8K37_RS12405 (AB8K37_12405) hupB 2554870..2555160 (-) 291 WP_254892905.1 nucleoid-associated protein HU-beta -
  AB8K37_RS12410 (AB8K37_12410) lon 2555351..2557705 (-) 2355 WP_001295325.1 endopeptidase La -
  AB8K37_RS12415 (AB8K37_12415) clpX 2557893..2559167 (-) 1275 WP_000130305.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  AB8K37_RS12420 (AB8K37_12420) clpP 2559293..2559916 (-) 624 WP_106490466.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  AB8K37_RS12425 (AB8K37_12425) tig 2560162..2561460 (-) 1299 WP_001198386.1 trigger factor -
  AB8K37_RS12430 (AB8K37_12430) bolA 2561804..2562121 (-) 318 WP_000973448.1 transcriptional regulator BolA -
  AB8K37_RS12435 (AB8K37_12435) yajG 2562426..2563004 (+) 579 WP_001295326.1 lipoprotein -
  AB8K37_RS12440 (AB8K37_12440) ampG 2563048..2564523 (+) 1476 WP_000098429.1 muropeptide MFS transporter AmpG -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23172.62 Da        Isoelectric Point: 5.6032

>NTDB_id=928083 AB8K37_RS12420 WP_106490466.1 2559293..2559916(-) (clpP) [Escherichia coli strain CRE78]
MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLVVAQMLFLEAENPEKDIYLYINSP
GGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK
GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN

Nucleotide


Download         Length: 624 bp        

>NTDB_id=928083 AB8K37_RS12420 WP_106490466.1 2559293..2559916(-) (clpP) [Escherichia coli strain CRE78]
ATGTCATACAGCGGCGAACGAGATAACTTTGCACCCCATATGGCGCTGGTGCCGATGGTCATTGAACAGACCTCACGCGG
TGAGCGCTCTTTTGATATCTATTCTCGTCTACTTAAGGAACGCGTCATTTTTCTGACTGGCCAGGTTGAAGACCACATGG
CTAACCTGGTTGTGGCGCAGATGCTGTTCCTGGAAGCGGAAAACCCAGAAAAAGATATCTATCTGTACATTAACTCCCCA
GGCGGGGTGATCACTGCCGGGATGTCTATCTATGACACCATGCAGTTTATCAAGCCTGATGTCAGCACCATCTGTATGGG
CCAGGCGGCCTCGATGGGCGCTTTCTTGCTGACCGCAGGGGCAAAAGGTAAACGTTTTTGCCTGCCGAATTCGCGCGTGA
TGATTCACCAACCGTTGGGCGGCTACCAGGGCCAGGCGACCGATATCGAAATTCATGCCCGTGAAATTCTGAAAGTTAAA
GGGCGCATGAATGAACTTATGGCGCTTCATACGGGTCAATCATTAGAACAGATTGAACGTGATACCGAGCGCGATCGCTT
CCTTTCCGCCCCTGAAGCGGTGGAATACGGTCTGGTCGATTCGATTCTGACCCATCGTAATTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

69.271

92.754

0.643
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.085

90.821

0.618
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

93.72

0.527
  clpP Streptococcus pneumoniae R6

55.67

93.72

0.522
  clpP Streptococcus pneumoniae TIGR4

55.67

93.72

0.522
  clpP Streptococcus pneumoniae Rx1

55.67

93.72

0.522
  clpP Streptococcus pneumoniae D39

55.67

93.72

0.522
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.639

93.72

0.512
  clpP Streptococcus pyogenes JRS4

55.789

91.787

0.512
  clpP Streptococcus pyogenes MGAS315

55.789

91.787

0.512
  clpP Streptococcus thermophilus LMG 18311

54.404

93.237

0.507
  clpP Streptococcus thermophilus LMD-9

54.404

93.237

0.507
  clpP Streptococcus mutans UA159

53.368

93.237

0.498