Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5L52_RS29295 Genome accession   NZ_CP163525
Coordinates   6414074..6414739 (+) Length   221 a.a.
NCBI ID   WP_351026531.1    Uniprot ID   -
Organism   Streptomyces sp. CG4     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6409074..6419739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5L52_RS29260 (AB5L52_29260) - 6410007..6410201 (+) 195 WP_351026539.1 hypothetical protein -
  AB5L52_RS29265 (AB5L52_29265) - 6410237..6410509 (+) 273 WP_369367119.1 hypothetical protein -
  AB5L52_RS29270 (AB5L52_29270) - 6410702..6410932 (+) 231 WP_351026535.1 hypothetical protein -
  AB5L52_RS29285 (AB5L52_29285) tig 6411665..6413053 (+) 1389 WP_369367121.1 trigger factor -
  AB5L52_RS29290 (AB5L52_29290) clpP 6413399..6414004 (+) 606 WP_351026752.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5L52_RS29295 (AB5L52_29295) clpP 6414074..6414739 (+) 666 WP_351026531.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5L52_RS29300 (AB5L52_29300) clpX 6414911..6416197 (+) 1287 WP_069780904.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5L52_RS29305 (AB5L52_29305) - 6416333..6417331 (-) 999 WP_351569753.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24499.87 Da        Isoelectric Point: 4.5713

>NTDB_id=926622 AB5L52_RS29295 WP_351026531.1 6414074..6414739(+) (clpP) [Streptomyces sp. CG4]
MSNFPGAASGMYEGPRPDSRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDIS
IYINSPGGDMTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTAGKRMALPNSRVLIHQPAGSTGRGQLSDLEIIA
NEFTRMREQLENMLAKHSNQPIEKIREDIERDKILTAEEALEYGLVDQIISTRKLNNAEVR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=926622 AB5L52_RS29295 WP_351026531.1 6414074..6414739(+) (clpP) [Streptomyces sp. CG4]
ATGAGCAACTTCCCCGGCGCCGCCAGCGGCATGTACGAGGGGCCTCGCCCCGACAGCCGCTATGTCATCCCGCGCTTCGT
CGAGCGCACCTCCCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTGGGCGTCC
AGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGTCTGGAGTCGATGGACCCGGACCGGGACATCTCG
ATCTACATCAACAGCCCCGGTGGCGACATGACCGCCCTGACGGCGATCTACGACACCATGCAGTTCGTGAAGCCCGACAT
CCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCGGCGGCCATCCTGCTCGCCGCCGGTACGGCCGGCAAGCGCATGGCGC
TCCCGAACTCCCGCGTGCTGATCCACCAGCCGGCGGGCTCCACCGGCCGCGGCCAGCTCTCCGATCTGGAGATCATCGCC
AACGAGTTCACCCGGATGCGCGAGCAGCTGGAGAACATGCTGGCGAAGCACTCGAACCAGCCGATCGAGAAGATCCGCGA
GGACATCGAGCGCGACAAGATCCTCACGGCCGAGGAGGCGCTGGAGTACGGCCTCGTCGACCAGATCATCTCCACCCGCA
AGCTGAACAACGCCGAGGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(32-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

85.973

0.448
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

85.068

0.43
  clpP Streptococcus thermophilus LMG 18311

46.154

88.235

0.407
  clpP Streptococcus thermophilus LMD-9

46.154

88.235

0.407
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

88.688

0.398
  clpP Streptococcus pneumoniae Rx1

44.388

88.688

0.394
  clpP Streptococcus pneumoniae D39

44.388

88.688

0.394
  clpP Streptococcus pneumoniae R6

44.388

88.688

0.394
  clpP Streptococcus pneumoniae TIGR4

44.388

88.688

0.394
  clpP Streptococcus mutans UA159

44.615

88.235

0.394
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

88.688

0.389
  clpP Streptococcus pyogenes JRS4

43.59

88.235

0.385
  clpP Streptococcus pyogenes MGAS315

43.59

88.235

0.385