Detailed information NTG0926050

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: OX462_RS24185
• Genome accession: NZ_CP142524
• Coordinates: 5381950..5383089 (+)
• Length: 379 a.a.
• NCBI ID: WP_409027241.1
• Uniprot ID: -
• Organism: Janthinobacterium sp. SUN098
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5376950..5388089

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OX462_RS24155 (OX462_24155)	-	5377344..5377901 (+)	558	WP_070312386.1	DUF3455 domain-containing protein	-
OX462_RS24160 (OX462_24160)	-	5377959..5378558 (+)	600	WP_254679516.1	sigma-70 family RNA polymerase sigma factor	-
OX462_RS24165 (OX462_24165)	-	5378555..5379271 (+)	717	WP_121668474.1	anti-sigma factor domain-containing protein	-
OX462_RS24170 (OX462_24170)	proC	5379284..5380114 (-)	831	WP_121668473.1	pyrroline-5-carboxylate reductase	-
OX462_RS24175 (OX462_24175)	-	5380131..5380832 (-)	702	WP_409027240.1	YggS family pyridoxal phosphate-dependent enzyme	-
OX462_RS24180 (OX462_24180)	pilT	5380903..5381946 (+)	1044	WP_070312390.1	type IV pilus twitching motility protein PilT	Machinery gene
OX462_RS24185 (OX462_24185)	pilU	5381950..5383089 (+)	1140	WP_409027241.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
OX462_RS24190 (OX462_24190)	-	5383091..5383576 (+)	486	WP_070222603.1	glutathione peroxidase	-
OX462_RS24195 (OX462_24195)	-	5383761..5385869 (+)	2109	WP_409027242.1	putative bifunctional diguanylate cyclase/phosphodiesterase	-
OX462_RS24200 (OX462_24200)	glcF	5385862..5387097 (-)	1236	WP_409027243.1	glycolate oxidase subunit GlcF	-

Sequence

Protein

• Length: 379 a.a.
• Molecular weight: 40934.08 Da
• Isoelectric Point: 7.0446

>NTDB_id=926050 OX462_RS24185 WP_409027241.1 5381950..5383089(+) (pilU) [Janthinobacterium sp. SUN098]
MQTTHEHYGAMHALLAQMRARGGSDLFITAGFPPAIKLDGKLTPLAGGALAAQQAAGYVRAVMNERQAAEFASSREANFA
ISPDGLGRFRVSAFVQMGQAGMVLRLINTAIPTLDGLGLPAILQDIVMSKRGLVIMVGATGCGKSTTLAAMVGHRNAHSH
GHIITIEDPVEFIHPHGNCIVTQREVGVDTDDWATALKNTLRQAPDVIQIGEIRDRDTMDHAIAFAETGHLCLATLHANN
ANQALDRIINFFPEERRQQLLMDLSLNLKGMISQRLIPNKDGGGRKAALEILLNSPLMSDLIFKGQVHEIKELMKKSREH
GMQTFDQALFDLHEAGAISYEDALRNADSVNDLRLAIKLKGATAPEPAPQTGATKLGLL

Nucleotide

• Length: 1140 bp

>NTDB_id=926050 OX462_RS24185 WP_409027241.1 5381950..5383089(+) (pilU) [Janthinobacterium sp. SUN098]
ATGCAGACGACGCACGAACACTATGGCGCCATGCACGCGCTGCTGGCGCAGATGCGCGCACGGGGCGGCTCCGACCTGTT
CATCACGGCCGGGTTTCCGCCCGCCATCAAGCTCGACGGCAAGCTGACGCCGCTGGCGGGCGGCGCGCTGGCCGCGCAGC
AGGCGGCCGGCTACGTGCGCGCCGTCATGAACGAACGCCAGGCGGCCGAGTTCGCATCGAGCCGCGAAGCCAATTTCGCC
ATCAGCCCGGACGGCCTGGGGCGTTTCCGCGTGTCCGCCTTCGTGCAGATGGGCCAGGCAGGCATGGTCTTGCGACTGAT
CAATACCGCCATCCCCACGCTCGATGGGCTCGGTTTACCCGCCATCCTGCAAGACATCGTGATGAGCAAGCGGGGCCTCG
TCATCATGGTGGGCGCCACGGGCTGCGGCAAGTCGACCACCCTGGCGGCCATGGTGGGCCACCGCAACGCGCACAGCCAT
GGCCACATCATCACCATCGAAGACCCCGTGGAATTCATCCATCCGCACGGCAACTGCATCGTCACCCAGCGCGAAGTGGG
CGTCGACACGGACGACTGGGCCACGGCCCTGAAAAACACCTTGCGCCAGGCGCCCGACGTGATCCAGATCGGCGAAATAC
GCGACCGCGACACGATGGACCACGCCATCGCATTTGCCGAGACGGGCCATCTGTGCCTGGCCACCCTGCACGCGAACAAC
GCCAACCAGGCGCTGGACCGCATCATCAATTTCTTCCCGGAAGAGCGGCGCCAGCAACTGCTGATGGATCTGTCGCTGAA
TTTGAAGGGCATGATTTCGCAGCGCTTGATCCCCAACAAGGATGGCGGCGGGCGCAAGGCGGCGCTGGAAATCCTGCTCA
ACTCGCCGCTGATGAGCGACCTGATCTTCAAGGGTCAGGTGCACGAGATCAAGGAATTGATGAAAAAATCGCGCGAGCAT
GGCATGCAGACGTTCGACCAGGCCCTGTTCGACCTGCACGAAGCGGGCGCCATCAGCTACGAAGACGCGCTGCGCAATGC
GGACTCCGTCAACGACCTGCGCCTGGCGATCAAACTCAAGGGCGCCACGGCGCCGGAACCCGCCCCGCAAACGGGCGCCA
CCAAACTGGGACTCCTCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (88-278)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	63.739	93.14	0.594
pilU	Acinetobacter baylyi ADP1	59.654	91.557	0.546
pilU	Vibrio cholerae strain A1552	56.851	90.501	0.515
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.731	86.28	0.377