Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   U6115_RS22065 Genome accession   NZ_CP142381
Coordinates   4608388..4609458 (+) Length   356 a.a.
NCBI ID   WP_043571899.1    Uniprot ID   A0A2R2IWY8
Organism   Chromobacterium subtsugae strain ATCC 31532     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4603388..4614458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6115_RS22040 (U6115_22040) rsmB 4603505..4604755 (-) 1251 WP_043571995.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  U6115_RS22045 (U6115_22045) htpX 4604828..4605685 (-) 858 WP_043571909.1 zinc metalloprotease HtpX -
  U6115_RS22050 (U6115_22050) fmt 4605727..4606650 (-) 924 WP_043571906.1 methionyl-tRNA formyltransferase -
  U6115_RS22055 (U6115_22055) def 4606723..4607226 (-) 504 WP_043571904.1 peptide deformylase -
  U6115_RS22060 (U6115_22060) - 4607354..4608391 (+) 1038 WP_043571901.1 LysM peptidoglycan-binding domain-containing protein -
  U6115_RS22065 (U6115_22065) dprA 4608388..4609458 (+) 1071 WP_043571899.1 DNA-processing protein DprA Machinery gene
  U6115_RS22070 (U6115_22070) - 4609489..4609947 (+) 459 WP_043571897.1 DUF494 family protein -
  U6115_RS22075 (U6115_22075) topA 4610096..4612405 (+) 2310 WP_043571895.1 type I DNA topoisomerase -
  U6115_RS22080 (U6115_22080) - 4612667..4613044 (+) 378 WP_043571893.1 hypothetical protein -
  U6115_RS22085 (U6115_22085) - 4613045..4613410 (-) 366 WP_080770137.1 DUF1622 domain-containing protein -
  U6115_RS22090 (U6115_22090) - 4613502..4613882 (-) 381 WP_043571890.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 36830.18 Da        Isoelectric Point: 5.8241

>NTDB_id=925635 U6115_RS22065 WP_043571899.1 4608388..4609458(+) (dprA) [Chromobacterium subtsugae strain ATCC 31532]
MSAPWLKLALTPGIGPVGFLKLIDAFGSAEHAAAARAAQTEKLIGREAADALQQDLAAPMVEAAQVWSEGEGCHLLTLLD
PDYPPQLAEAASPPPLLFARGRRELLARPMLAVVGSRAATPQGKRNAEDFAAGLAAHGYTIVSGLASGIDAAAHQGALAH
PASTIAVVGTGIDRVYPAGNRALAHRIAAEGLLLSEFPLGMGPLPGHFPRRNRIIAGLARGCLVVEAGTASGSLISARLA
MESNRDVMAIPGSIHNPQARGCHQLIKDGARLVESVDDVLDEVGRLSARQVEQAAPDGGKAAPLLDAMGWEPALAENLAD
ALGLTAGEVYAMLLELELDGQVASLAGGRFQRLART

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=925635 U6115_RS22065 WP_043571899.1 4608388..4609458(+) (dprA) [Chromobacterium subtsugae strain ATCC 31532]
ATGAGCGCCCCCTGGCTGAAGCTGGCGCTGACTCCCGGCATCGGCCCGGTCGGCTTTCTCAAGCTGATCGACGCCTTCGG
CTCGGCCGAGCACGCCGCCGCCGCCCGCGCCGCCCAGACGGAAAAGCTGATCGGCCGCGAGGCCGCCGACGCGCTGCAGC
AGGACCTGGCCGCGCCTATGGTGGAGGCCGCGCAGGTCTGGTCCGAAGGCGAAGGCTGCCACCTGCTGACGCTGCTGGAC
CCCGATTATCCGCCGCAACTGGCCGAAGCGGCGTCGCCGCCGCCCTTGCTGTTCGCCCGCGGCCGGCGCGAGCTGCTGGC
GCGGCCTATGCTGGCGGTGGTCGGCAGCCGCGCCGCCACCCCGCAGGGCAAGCGCAACGCCGAGGACTTCGCCGCCGGCC
TGGCGGCGCACGGCTATACCATCGTCAGCGGCCTGGCCAGCGGCATCGACGCCGCCGCCCACCAGGGCGCGCTCGCCCAC
CCCGCGTCCACCATCGCGGTGGTCGGCACCGGCATCGACCGGGTCTACCCGGCCGGCAACCGCGCGCTGGCCCACCGCAT
CGCGGCCGAAGGCCTGCTGCTGTCGGAATTCCCGCTGGGCATGGGGCCGCTGCCCGGGCACTTCCCGCGCCGCAACCGCA
TCATCGCCGGCCTGGCGCGCGGCTGCCTGGTGGTGGAGGCCGGCACCGCCTCCGGCTCGCTGATCAGCGCGCGGCTGGCG
ATGGAAAGCAACCGCGACGTGATGGCGATTCCCGGCAGCATCCACAACCCGCAGGCGCGCGGCTGCCACCAGCTGATCAA
GGACGGCGCGCGGCTGGTGGAAAGCGTCGACGACGTGCTGGACGAAGTCGGCCGCCTGTCGGCGCGGCAGGTCGAACAAG
CCGCGCCGGACGGCGGGAAAGCCGCGCCGCTGCTGGACGCCATGGGTTGGGAACCGGCGCTGGCCGAGAACCTGGCGGAC
GCGCTCGGGTTGACTGCCGGGGAGGTTTACGCGATGCTGCTCGAACTGGAGCTGGACGGCCAGGTGGCCAGCCTCGCCGG
CGGCCGCTTTCAAAGGCTGGCTCGAACCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(294-348)

DNA recombination-mediator protein A (DNA_processg_A)

(70-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R2IWY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

47.287

100

0.514
  dprA Neisseria meningitidis MC58

47.287

100

0.514
  dprA Neisseria gonorrhoeae MS11

47.013

100

0.508
  dprA Neisseria gonorrhoeae strain FA1090

46.494

100

0.503
  dprA Legionella pneumophila strain ERS1305867

43.49

100

0.441
  dprA Vibrio campbellii strain DS40M4

41.551

100

0.421
  dprA Acinetobacter baylyi ADP1

40.556

100

0.41
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.058

100

0.396
  dprA Acinetobacter baumannii D1279779

37.464

97.472

0.365