Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | U6115_RS21745 | Genome accession | NZ_CP142381 |
| Coordinates | 4550120..4550590 (-) | Length | 156 a.a. |
| NCBI ID | WP_052258328.1 | Uniprot ID | A0A2R2IWU9 |
| Organism | Chromobacterium subtsugae strain ATCC 31532 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 4545120..4555590
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U6115_RS21730 (U6115_21730) | rpoH | 4545236..4546099 (+) | 864 | WP_043579577.1 | RNA polymerase sigma factor RpoH | - |
| U6115_RS21735 (U6115_21735) | - | 4546299..4548086 (-) | 1788 | WP_043579580.1 | PglL family O-oligosaccharyltransferase | - |
| U6115_RS21740 (U6115_21740) | - | 4548181..4550025 (-) | 1845 | WP_043579582.1 | PglL family O-oligosaccharyltransferase | - |
| U6115_RS21745 (U6115_21745) | pilA | 4550120..4550590 (-) | 471 | WP_052258328.1 | pilin | Machinery gene |
| U6115_RS21750 (U6115_21750) | - | 4550682..4551158 (-) | 477 | WP_043579592.1 | pilin | - |
| U6115_RS21755 (U6115_21755) | - | 4551427..4552776 (+) | 1350 | WP_043579594.1 | adenosylmethionine--8-amino-7-oxononanoate transaminase | - |
| U6115_RS21760 (U6115_21760) | - | 4552859..4554358 (+) | 1500 | WP_043579595.1 | hypothetical protein | - |
| U6115_RS21765 (U6115_21765) | proB | 4554434..4555552 (+) | 1119 | WP_043579597.1 | glutamate 5-kinase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 16138.22 Da Isoelectric Point: 8.9435
>NTDB_id=925633 U6115_RS21745 WP_052258328.1 4550120..4550590(-) (pilA) [Chromobacterium subtsugae strain ATCC 31532]
MRNRTTQRGFTLIELMIVVAIVGILAAIAIPAYQDYAKRSRVAEGLALADAAKTAVAEYYASKSAFASSTPYNSAYGLST
ASSITGNAVNSVSVLASGVIQLTYNNTVSSGAQLDLVPSVTSGSVTWVCTYTGTGGGTTAIGTQLQANWVPTNCRQ
MRNRTTQRGFTLIELMIVVAIVGILAAIAIPAYQDYAKRSRVAEGLALADAAKTAVAEYYASKSAFASSTPYNSAYGLST
ASSITGNAVNSVSVLASGVIQLTYNNTVSSGAQLDLVPSVTSGSVTWVCTYTGTGGGTTAIGTQLQANWVPTNCRQ
Nucleotide
Download Length: 471 bp
>NTDB_id=925633 U6115_RS21745 WP_052258328.1 4550120..4550590(-) (pilA) [Chromobacterium subtsugae strain ATCC 31532]
ATGCGGAACAGAACGACGCAGCGCGGCTTTACCCTGATAGAGCTGATGATAGTGGTGGCGATAGTCGGCATCCTGGCCGC
CATCGCCATCCCGGCCTACCAGGACTACGCCAAGCGGTCGCGGGTGGCCGAGGGGCTGGCGCTGGCCGACGCCGCCAAGA
CCGCGGTGGCGGAGTACTACGCCAGCAAAAGCGCGTTCGCCAGCTCCACGCCGTACAACAGCGCGTACGGGCTGTCGACG
GCGTCGTCGATCACCGGCAACGCGGTGAACAGCGTGTCGGTGCTGGCCAGCGGCGTGATCCAACTGACCTACAACAACAC
GGTCTCCAGCGGCGCGCAGCTGGATCTGGTGCCCTCGGTCACCTCGGGTTCGGTTACCTGGGTTTGCACCTATACCGGCA
CCGGCGGCGGCACCACGGCCATCGGCACGCAGTTGCAGGCCAACTGGGTGCCGACCAACTGCCGGCAGTAG
ATGCGGAACAGAACGACGCAGCGCGGCTTTACCCTGATAGAGCTGATGATAGTGGTGGCGATAGTCGGCATCCTGGCCGC
CATCGCCATCCCGGCCTACCAGGACTACGCCAAGCGGTCGCGGGTGGCCGAGGGGCTGGCGCTGGCCGACGCCGCCAAGA
CCGCGGTGGCGGAGTACTACGCCAGCAAAAGCGCGTTCGCCAGCTCCACGCCGTACAACAGCGCGTACGGGCTGTCGACG
GCGTCGTCGATCACCGGCAACGCGGTGAACAGCGTGTCGGTGCTGGCCAGCGGCGTGATCCAACTGACCTACAACAACAC
GGTCTCCAGCGGCGCGCAGCTGGATCTGGTGCCCTCGGTCACCTCGGGTTCGGTTACCTGGGTTTGCACCTATACCGGCA
CCGGCGGCGGCACCACGGCCATCGGCACGCAGTTGCAGGCCAACTGGGTGCCGACCAACTGCCGGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
42.135 |
100 |
0.481 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
47.333 |
96.154 |
0.455 |
| pilA2 | Legionella pneumophila str. Paris |
47.333 |
96.154 |
0.455 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
36.458 |
100 |
0.449 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
42.236 |
100 |
0.436 |
| comP | Acinetobacter baylyi ADP1 |
41.935 |
99.359 |
0.417 |
| pilE | Neisseria gonorrhoeae MS11 |
39.264 |
100 |
0.41 |