Detailed information NTG0925498

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: AB5J53_RS08175
• Genome accession: NZ_CP163443
• Coordinates: 1729944..1730579 (+)
• Length: 211 a.a.
• NCBI ID: WP_369244941.1
• Uniprot ID: -
• Organism: Streptomyces sp. R41
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1724944..1735579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J53_RS08145 (AB5J53_08145)	-	1725036..1726757 (-)	1722	WP_369244936.1	urease subunit alpha	-
AB5J53_RS08150 (AB5J53_08150)	-	1726750..1727061 (-)	312	WP_369244937.1	urease subunit beta	-
AB5J53_RS08155 (AB5J53_08155)	-	1727078..1727380 (-)	303	WP_369244938.1	urease subunit gamma	-
AB5J53_RS08160 (AB5J53_08160)	-	1727512..1728141 (-)	630	WP_369244939.1	TetR/AcrR family transcriptional regulator	-
AB5J53_RS08165 (AB5J53_08165)	-	1728287..1729315 (+)	1029	WP_369244940.1	ABC transporter permease	-
AB5J53_RS08170 (AB5J53_08170)	-	1729498..1729776 (-)	279	WP_028800395.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
AB5J53_RS08175 (AB5J53_08175)	clpP	1729944..1730579 (+)	636	WP_369244941.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J53_RS08180 (AB5J53_08180)	-	1730587..1730892 (+)	306	WP_369244942.1	hypothetical protein	-
AB5J53_RS08185 (AB5J53_08185)	-	1731428..1731901 (+)	474	WP_369244943.1	C40 family peptidase	-
AB5J53_RS08190 (AB5J53_08190)	-	1731982..1732500 (+)	519	WP_369244944.1	DUF6328 family protein	-
AB5J53_RS08195 (AB5J53_08195)	-	1732454..1733071 (-)	618	WP_369244945.1	LysE family translocator	-
AB5J53_RS08200 (AB5J53_08200)	-	1733197..1734144 (+)	948	WP_369244946.1	LysR family transcriptional regulator	-
AB5J53_RS08205 (AB5J53_08205)	-	1734153..1734611 (-)	459	WP_369244947.1	ATP-binding protein	-

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 22787.88 Da
• Isoelectric Point: 4.7555

>NTDB_id=925498 AB5J53_RS08175 WP_369244941.1 1729944..1730579(+) (clpP) [Streptomyces sp. R41]
MDSPSARYVLPEFTERTSAGHRTLDPYSKLLDERIVFLGTPIDDTSANDVMAQFMHLEYLAPDQDISLYINSPGGSFSAM
SAVYDTMQFVTCDVETVCLGQAASAAAVLLAGGTPGKRFALPGARVLIHQPSTPEPIQGQASDLAIQAEELMRTRKLLEE
MLVRHTGQSPEQVAADIERDKILDAPAAVAYGLVDRIIPSRKASRTAPGAR

Nucleotide

• Length: 636 bp

>NTDB_id=925498 AB5J53_RS08175 WP_369244941.1 1729944..1730579(+) (clpP) [Streptomyces sp. R41]
ATGGACAGCCCGTCCGCCCGCTATGTCCTGCCCGAGTTCACCGAACGGACCAGTGCGGGGCACCGGACCCTGGATCCGTA
CTCGAAGCTGCTCGACGAGCGGATCGTGTTCCTCGGGACGCCGATCGACGACACCTCGGCGAACGACGTGATGGCACAGT
TCATGCACCTCGAGTACCTGGCCCCCGACCAGGACATCTCCCTGTACATCAACTCTCCCGGCGGCTCGTTCAGCGCGATG
TCGGCGGTCTACGACACGATGCAGTTCGTCACCTGCGACGTGGAGACGGTCTGCCTGGGGCAGGCGGCGTCGGCCGCAGC
CGTGCTGCTGGCCGGCGGTACGCCGGGCAAGCGGTTCGCGCTGCCGGGCGCCCGCGTGCTCATCCACCAGCCGTCGACAC
CCGAACCGATCCAGGGGCAGGCGAGCGATCTCGCCATCCAGGCCGAGGAGTTGATGCGCACCCGGAAGCTGCTGGAGGAG
ATGCTCGTACGGCACACGGGGCAGAGTCCGGAGCAAGTCGCCGCGGACATCGAGCGGGACAAGATCCTGGACGCGCCGGC
GGCGGTGGCGTACGGACTGGTCGACCGGATCATCCCGAGCCGCAAGGCCTCCCGCACCGCGCCCGGCGCCAGGTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (20-200)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	45.789	90.047	0.412
clpP	Streptococcus mutans UA159	43.814	91.943	0.403
clpP	Streptococcus pneumoniae R6	44.041	91.469	0.403
clpP	Streptococcus pneumoniae Rx1	44.041	91.469	0.403
clpP	Streptococcus pneumoniae D39	44.041	91.469	0.403
clpP	Streptococcus pneumoniae TIGR4	44.041	91.469	0.403
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	43.299	91.943	0.398
clpP	Lactococcus lactis subsp. cremoris KW2	43.299	91.943	0.398
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	44.444	89.573	0.398
clpP	Streptococcus thermophilus LMG 18311	42.784	91.943	0.393
clpP	Streptococcus pyogenes JRS4	42.784	91.943	0.393
clpP	Streptococcus thermophilus LMD-9	42.784	91.943	0.393
clpP	Streptococcus pyogenes MGAS315	42.784	91.943	0.393