Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB5J50_RS16950 Genome accession   NZ_CP163440
Coordinates   3685508..3687241 (+) Length   577 a.a.
NCBI ID   WP_369258931.1    Uniprot ID   -
Organism   Streptomyces sp. R35     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3680508..3692241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J50_RS16920 (AB5J50_16920) - 3680823..3682712 (+) 1890 WP_369258927.1 tyrosine-type recombinase/integrase -
  AB5J50_RS16940 (AB5J50_16940) - 3683400..3683705 (+) 306 WP_327428523.1 YtxH domain-containing protein -
  AB5J50_RS16945 (AB5J50_16945) - 3683854..3685308 (+) 1455 WP_369258929.1 FGGY family carbohydrate kinase -
  AB5J50_RS16950 (AB5J50_16950) rcrP 3685508..3687241 (+) 1734 WP_369258931.1 ABC transporter ATP-binding protein Regulator
  AB5J50_RS16955 (AB5J50_16955) rcrQ 3687241..3689169 (+) 1929 WP_369258934.1 ABC transporter ATP-binding protein Regulator
  AB5J50_RS16960 (AB5J50_16960) - 3689347..3690720 (-) 1374 WP_369258936.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62656.87 Da        Isoelectric Point: 5.5474

>NTDB_id=925331 AB5J50_RS16950 WP_369258931.1 3685508..3687241(+) (rcrP) [Streptomyces sp. R35]
MLIRLLRTYLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGAVMIGISMAQVVCNIGAVYFGA
RTASAVGRDIRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LIAVVPILGIGVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKERFRGANTELTEVSLGTGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVVELRRHGHLEIREAGFRYPGAEEPVLRTIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVDQLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGAGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=925331 AB5J50_RS16950 WP_369258931.1 3685508..3687241(+) (rcrP) [Streptomyces sp. R35]
GTGCTCATACGACTGCTTCGGACCTACCTCAGTCCGTACAAGAAGCCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACTTGCCCACTCTGAACGCGCACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGATACA
TCCTGTCCTTCGGCGCCGTGATGATCGGCATCTCGATGGCGCAGGTCGTCTGCAACATCGGTGCCGTGTACTTCGGCGCC
CGTACGGCGTCGGCCGTCGGCCGGGACATCCGGGCCGCCGTCTTCGACCGTGTCCAGTCCTTCTCGGCGCGCGAGGTCGG
CCAGTTCGGGGCACCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCATCCTGGCCCTCGGCCTGGATGTGCCGCTGTCCGCGGTG
CTGATCGCCGTGGTGCCGATCCTCGGCATCGGAGTGACTCTCATCGTGCGCAGGCTGCGCCCGCTGTTCCGGACCATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTGCGCGACG
ACTACGAGAAGGAGCGCTTCCGGGGCGCGAACACCGAGCTGACCGAGGTGTCGCTGGGCACCGGGCGGATGCTGGCGCTG
ATGTTCCCGATGGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGCGCCCATCGCATCGACAGCGG
CGGCATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCCAGGAGGTTCTCGACACGAGCAGCAGCGTGGTCCCG
CCGACCGCGCCCGTCGTCGAGCTGCGCCGCCACGGCCATCTGGAGATCCGCGAGGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTCCTGAGGACCATCGACCTGGTGGCCCGGCCCGGCGAGGTGACCGCCGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACCCTGCTCGGCCTGGTCCCCCGCCTCTTCGACGCCACCGACGGCGAGGTGCTCGTCGACGGCGTGGACGTCGCG
ACCATCGAGCCGAAGCTGCTGGCCAGAACGGTAGGCCTGGTCCCGCAGAAGCCGTACCTGTTCGCGGGCACCGTGGCCAC
GAACCTCCGGTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGACCAGCTGGAGAACGGCCTGGACTCCCCGATCGCGCAGGGCGGCACGAACGTGTCCGGTGGTCAGCGCCAGCGCCTG
GCCATCGCCCGTACGCTCGTCCAGCGCCCCGAGATCTATCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCGACCGA
CGCGGCACTGCGGGCGGCGCTCGCCGAGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCGCCGGGCGGCACCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.519

100

0.399