Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J50_RS08230 Genome accession   NZ_CP163440
Coordinates   1734352..1734987 (+) Length   211 a.a.
NCBI ID   WP_369256329.1    Uniprot ID   -
Organism   Streptomyces sp. R35     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1729352..1739987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J50_RS08200 (AB5J50_08200) - 1730858..1731169 (-) 312 WP_054228979.1 urease subunit beta -
  AB5J50_RS08205 (AB5J50_08205) - 1731186..1731488 (-) 303 WP_121416835.1 urease subunit gamma -
  AB5J50_RS08210 (AB5J50_08210) - 1731619..1732248 (-) 630 WP_369256321.1 TetR/AcrR family transcriptional regulator -
  AB5J50_RS08215 (AB5J50_08215) - 1732425..1733453 (+) 1029 WP_369256323.1 ABC transporter permease -
  AB5J50_RS08220 (AB5J50_08220) - 1733667..1733945 (-) 279 WP_369256325.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  AB5J50_RS08225 (AB5J50_08225) - 1734058..1734219 (+) 162 WP_369256327.1 hypothetical protein -
  AB5J50_RS08230 (AB5J50_08230) clpP 1734352..1734987 (+) 636 WP_369256329.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J50_RS08235 (AB5J50_08235) - 1734995..1735300 (+) 306 WP_369256331.1 hypothetical protein -
  AB5J50_RS08240 (AB5J50_08240) - 1735837..1736310 (+) 474 WP_369256333.1 C40 family peptidase -
  AB5J50_RS08245 (AB5J50_08245) - 1736324..1736594 (+) 271 Protein_1645 DUF6328 family protein -
  AB5J50_RS08250 (AB5J50_08250) - 1736629..1737087 (-) 459 WP_327427015.1 ATP-binding protein -
  AB5J50_RS08255 (AB5J50_08255) - 1737300..1738157 (+) 858 WP_369256335.1 helix-turn-helix domain-containing protein -
  AB5J50_RS08260 (AB5J50_08260) - 1738170..1738394 (+) 225 WP_327427017.1 DUF397 domain-containing protein -
  AB5J50_RS08265 (AB5J50_08265) - 1738407..1739531 (-) 1125 WP_369256337.1 8-amino-7-oxononanoate synthase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22820.94 Da        Isoelectric Point: 5.2622

>NTDB_id=925318 AB5J50_RS08230 WP_369256329.1 1734352..1734987(+) (clpP) [Streptomyces sp. R35]
MHSPSAHYVLPTFTERTSTGHQTLDPYSKLLEERIVFLGTPIDDTSANDVMAQFMHLEYLAPDRDISLYINSPGGSFSAM
SAVYDTMQFVTCDVETICLGQAASAAAVLLAGGTPGKRFALPGARVLIHQPSVSEPIQGQASDLAIQAEELVRTRKLLEE
MLVRHTGQSPEQVAADIERDKILDAPAALAYGLIDRIVPSRKTSRTAPGAR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=925318 AB5J50_RS08230 WP_369256329.1 1734352..1734987(+) (clpP) [Streptomyces sp. R35]
ATGCACAGCCCGTCCGCCCACTATGTCCTGCCCACGTTCACGGAACGGACCAGCACGGGGCACCAGACCCTGGATCCGTA
CTCGAAGCTGCTCGAAGAGCGGATCGTGTTCCTCGGGACGCCGATCGACGACACGTCGGCGAACGATGTGATGGCGCAGT
TCATGCACCTTGAGTACCTGGCACCGGACCGGGACATCTCGCTGTACATCAACTCCCCCGGCGGCTCGTTCAGCGCGATG
TCGGCGGTCTACGACACGATGCAGTTCGTCACGTGCGACGTGGAGACGATCTGCCTGGGGCAGGCGGCGTCGGCCGCGGC
CGTGCTGCTGGCCGGGGGCACGCCGGGCAAGCGGTTCGCGCTGCCGGGTGCCCGTGTGCTCATCCACCAGCCGTCGGTCT
CCGAGCCGATCCAGGGTCAGGCGAGCGATCTGGCCATCCAGGCCGAGGAGTTGGTGCGCACCCGGAAGCTGCTGGAGGAA
ATGCTCGTACGGCACACCGGGCAGAGTCCGGAGCAAGTCGCCGCGGACATCGAGCGGGACAAGATCCTGGACGCGCCGGC
GGCGTTGGCGTACGGACTGATCGACCGGATCGTCCCGAGCCGCAAGACCTCGCGCACCGCGCCCGGCGCGAGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

47.368

90.047

0.427
  clpP Streptococcus mutans UA159

43.564

95.735

0.417
  clpP Streptococcus pneumoniae R6

45.078

91.469

0.412
  clpP Streptococcus pneumoniae Rx1

45.078

91.469

0.412
  clpP Streptococcus pneumoniae D39

45.078

91.469

0.412
  clpP Streptococcus pneumoniae TIGR4

45.078

91.469

0.412
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.845

91.943

0.412
  clpP Lactococcus lactis subsp. cremoris KW2

44.845

91.943

0.412
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

44.974

89.573

0.403
  clpP Streptococcus thermophilus LMG 18311

43.814

91.943

0.403
  clpP Streptococcus pyogenes JRS4

43.814

91.943

0.403
  clpP Streptococcus thermophilus LMD-9

43.814

91.943

0.403
  clpP Streptococcus pyogenes MGAS315

43.814

91.943

0.403