Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J49_RS01560 Genome accession   NZ_CP163439
Coordinates   365218..365856 (+) Length   212 a.a.
NCBI ID   WP_302003268.1    Uniprot ID   -
Organism   Streptomyces sp. R28     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 360218..370856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J49_RS01535 (AB5J49_01535) - 360275..361336 (+) 1062 WP_369166625.1 family 2 encapsulin nanocompartment cargo protein terpene cyclase -
  AB5J49_RS01540 (AB5J49_01540) - 361387..362265 (+) 879 WP_369166627.1 geranyl diphosphate 2-C-methyltransferase -
  AB5J49_RS01545 (AB5J49_01545) - 362384..363286 (+) 903 WP_369166629.1 SGNH/GDSL hydrolase family protein -
  AB5J49_RS01550 (AB5J49_01550) - 363294..363776 (-) 483 WP_369166631.1 VOC family protein -
  AB5J49_RS01555 (AB5J49_01555) - 363902..365107 (+) 1206 WP_369166633.1 epoxide hydrolase family protein -
  AB5J49_RS01560 (AB5J49_01560) clpP 365218..365856 (+) 639 WP_302003268.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J49_RS01565 (AB5J49_01565) - 365858..366460 (+) 603 WP_369166634.1 ClpP family protease -
  AB5J49_RS01570 (AB5J49_01570) - 366476..366877 (-) 402 WP_369166635.1 helix-turn-helix domain-containing protein -
  AB5J49_RS01575 (AB5J49_01575) - 366994..367449 (-) 456 WP_369166637.1 ATP-binding protein -
  AB5J49_RS01580 (AB5J49_01580) - 367548..368723 (-) 1176 WP_369166638.1 DUF6777 domain-containing protein -
  AB5J49_RS01585 (AB5J49_01585) - 368887..370173 (+) 1287 WP_369166640.1 streptophobe family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23104.12 Da        Isoelectric Point: 4.6949

>NTDB_id=925231 AB5J49_RS01560 WP_302003268.1 365218..365856(+) (clpP) [Streptomyces sp. R28]
MTPLTTLAPRAEEGDTPPTRFDDQLASQLLAQRIVLLGTQVDEVSANRVCAQLLILSAEDPRTDIALYINSPGGSVHAGL
AIYDTMRLIPNDVSTLAMGFAASMGQFLLSVGAEGKRYALPNARIMMHQPSAGIGGTTADIEIQAENLEFTKKTIERITA
EHTGQSPETISRDGDRDRWFTAEEAREYGMVDRVVESLTDVRPASSRRRMGL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=925231 AB5J49_RS01560 WP_302003268.1 365218..365856(+) (clpP) [Streptomyces sp. R28]
ATGACACCACTGACCACGCTCGCTCCGCGGGCGGAGGAGGGCGACACCCCTCCCACCCGCTTCGACGACCAGCTCGCGTC
CCAGCTGCTGGCACAGCGCATCGTCCTGCTGGGCACCCAGGTCGACGAGGTCTCCGCGAACCGGGTCTGCGCCCAGCTGC
TGATCCTGTCCGCGGAGGACCCGCGCACCGACATCGCCCTGTACATCAACAGCCCCGGCGGCTCGGTGCACGCCGGCCTC
GCCATCTACGACACGATGCGGCTGATCCCGAACGACGTGTCGACGCTCGCCATGGGCTTCGCGGCCAGCATGGGCCAGTT
CCTGCTCAGTGTCGGCGCCGAGGGCAAGCGGTACGCGCTGCCGAACGCGCGGATCATGATGCACCAGCCGTCGGCGGGCA
TCGGCGGCACCACCGCCGACATCGAGATCCAGGCGGAGAACCTGGAGTTCACCAAGAAGACCATCGAGCGGATCACCGCG
GAGCACACCGGCCAGAGTCCCGAGACGATCTCCCGGGACGGCGACCGCGACCGCTGGTTCACGGCCGAGGAGGCCAGGGA
GTACGGCATGGTGGACCGGGTGGTGGAGTCCCTCACGGACGTCCGCCCGGCTTCCTCCCGACGACGGATGGGGCTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(24-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.962

0.42
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.163

81.132

0.415
  clpP Streptococcus pneumoniae Rx1

50.289

81.604

0.41
  clpP Streptococcus pneumoniae D39

50.289

81.604

0.41
  clpP Streptococcus pneumoniae R6

50.289

81.604

0.41
  clpP Streptococcus pneumoniae TIGR4

50.289

81.604

0.41
  clpP Lactococcus lactis subsp. cremoris KW2

48

82.547

0.396
  clpP Streptococcus mutans UA159

47.429

82.547

0.392
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

47.429

82.547

0.392
  clpP Streptococcus pyogenes JRS4

47.429

82.547

0.392
  clpP Streptococcus pyogenes MGAS315

47.429

82.547

0.392
  clpP Streptococcus thermophilus LMG 18311

46.821

81.604

0.382
  clpP Streptococcus thermophilus LMD-9

46.821

81.604

0.382