Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J56_RS43285 Genome accession   NZ_CP163435
Coordinates   9666369..9666971 (-) Length   200 a.a.
NCBI ID   WP_369241708.1    Uniprot ID   -
Organism   Streptomyces sp. R21     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 9661369..9671971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J56_RS43265 (AB5J56_43260) - 9662510..9663874 (+) 1365 WP_369241700.1 DUF6777 domain-containing protein -
  AB5J56_RS43270 (AB5J56_43265) - 9664096..9664605 (+) 510 WP_369241702.1 hypothetical protein -
  AB5J56_RS43275 (AB5J56_43270) - 9665015..9665722 (+) 708 WP_369241704.1 carbon-nitrogen hydrolase family protein -
  AB5J56_RS43280 (AB5J56_43275) - 9665870..9666322 (+) 453 WP_369241706.1 helix-turn-helix domain-containing protein -
  AB5J56_RS43285 (AB5J56_43280) clpP 9666369..9666971 (-) 603 WP_369241708.1 ClpP family protease Regulator
  AB5J56_RS43290 (AB5J56_43285) clpP 9666973..9667626 (-) 654 WP_369241710.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J56_RS43295 (AB5J56_43290) - 9667771..9668970 (-) 1200 WP_369241712.1 epoxide hydrolase family protein -
  AB5J56_RS43300 (AB5J56_43295) - 9669195..9670010 (+) 816 WP_369241714.1 alpha/beta fold hydrolase -
  AB5J56_RS43305 (AB5J56_43300) - 9670084..9670566 (+) 483 WP_369241716.1 VOC family protein -
  AB5J56_RS43310 (AB5J56_43305) - 9670759..9671763 (-) 1005 WP_369241718.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21673.53 Da        Isoelectric Point: 5.2634

>NTDB_id=925226 AB5J56_RS43285 WP_369241708.1 9666369..9666971(-) (clpP) [Streptomyces sp. R21]
MGSYTIPNVVERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSNPESEIAIYINSPGGSFTSLMAIY
DTMSFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLGQPASGGRQGTVSDLSLQAKEMLRIRAQVEEVLSRH
THHEASTLRADMDRDKVFTAHEAVAYGLADEVLSRRLATV

Nucleotide


Download         Length: 603 bp        

>NTDB_id=925226 AB5J56_RS43285 WP_369241708.1 9666369..9666971(-) (clpP) [Streptomyces sp. R21]
ATGGGTTCGTACACGATTCCGAACGTCGTCGAGCGGACCCCGCAGGGCGAGCGGTCCTACGACGTCTTCAGCCGGCTGCT
GTCCGAGCGGATCATCTTCCTCGGCACGGAGATCGACGACGGTGTCGCCAACGTCGTCATCGCGCAACTCCTCCATCTGG
AGTCGTCGAACCCGGAGAGCGAGATCGCGATCTACATCAACTCGCCCGGCGGCTCGTTCACTTCGCTCATGGCGATCTAC
GACACGATGTCGTTCGTCCAGGCGCCGATCTCGACGTTCTGCGTCGGTCAGGCCGCCTCCACCGCGGCGGTGCTGCTGGC
CGGGGGCGATCCCGGACGGCGGTTCGTGCTGGAGCACGCCCGGGTGCTGCTCGGCCAGCCGGCCAGTGGCGGACGGCAGG
GCACGGTGTCTGACCTCAGCCTCCAGGCCAAGGAGATGCTGCGGATCCGCGCGCAGGTCGAGGAGGTCCTCTCCCGGCAC
ACGCACCACGAAGCGAGCACCCTGCGCGCGGACATGGACCGCGACAAGGTCTTCACCGCACATGAGGCCGTGGCGTACGG
GCTCGCCGACGAGGTGCTGAGCCGACGGCTGGCGACGGTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

48.148

94.5

0.455
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

45.263

95

0.43
  clpP Streptococcus mutans UA159

39.683

94.5

0.375
  clpP Streptococcus pneumoniae TIGR4

38.542

96

0.37
  clpP Streptococcus pneumoniae R6

38.542

96

0.37
  clpP Streptococcus pneumoniae Rx1

38.542

96

0.37
  clpP Streptococcus pneumoniae D39

38.542

96

0.37
  clpP Streptococcus pyogenes JRS4

39.153

94.5

0.37
  clpP Streptococcus pyogenes MGAS315

39.153

94.5

0.37
  clpP Lactococcus lactis subsp. cremoris KW2

38.22

95.5

0.365