Detailed information NTG0925216

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: AB5J56_RS38465
• Genome accession: NZ_CP163435
• Coordinates: 8610581..8611216 (-)
• Length: 211 a.a.
• NCBI ID: WP_369239981.1
• Uniprot ID: -
• Organism: Streptomyces sp. R21
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 8605581..8616216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J56_RS38435 (AB5J56_38430)	-	8606577..8607035 (+)	459	WP_369239969.1	ATP-binding protein	-
AB5J56_RS38440 (AB5J56_38435)	-	8607044..8607961 (-)	918	WP_369239971.1	LysR family transcriptional regulator	-
AB5J56_RS38445 (AB5J56_38440)	-	8608052..8608675 (+)	624	WP_369239973.1	LysE family translocator	-
AB5J56_RS38450 (AB5J56_38445)	-	8608614..8609174 (-)	561	WP_369239975.1	DUF6328 family protein	-
AB5J56_RS38455 (AB5J56_38450)	-	8609254..8609727 (-)	474	WP_369239977.1	C40 family peptidase	-
AB5J56_RS38460 (AB5J56_38455)	-	8610265..8610573 (-)	309	WP_369239979.1	hypothetical protein	-
AB5J56_RS38465 (AB5J56_38460)	clpP	8610581..8611216 (-)	636	WP_369239981.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J56_RS38470 (AB5J56_38465)	-	8611441..8611716 (+)	276	WP_369239983.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
AB5J56_RS38475 (AB5J56_38470)	-	8611844..8612851 (-)	1008	WP_369239985.1	ABC transporter permease	-
AB5J56_RS38480 (AB5J56_38475)	-	8613000..8613650 (+)	651	WP_369239987.1	TetR/AcrR family transcriptional regulator	-
AB5J56_RS38485 (AB5J56_38480)	-	8613767..8614069 (+)	303	WP_020270782.1	urease subunit gamma	-
AB5J56_RS38490 (AB5J56_38485)	-	8614086..8614397 (+)	312	WP_369239989.1	urease subunit beta	-
AB5J56_RS38495 (AB5J56_38490)	-	8614390..8616111 (+)	1722	WP_369239991.1	urease subunit alpha	-

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 22647.67 Da
• Isoelectric Point: 4.6705

>NTDB_id=925216 AB5J56_RS38465 WP_369239981.1 8610581..8611216(-) (clpP) [Streptomyces sp. R21]
MNEPTARHVLPEFTERTSAGHRSLDPYSKLLDERIVFLGTPIDDTSANDVMAQFMHLEYLAPDRDIALYINSPGGSFSAM
TAVYDTMQFVTCDVETVCLGQAASAAAVLLAGGTSGKRSALPGARVLLHQPSFTEPIEGQASDLAIQAEELMRTRKMLEE
MLVRHTGQSAEQVAADIERDKILDAPAALAYGLVDAIVPSRKTSGTAPGAR

Nucleotide

• Length: 636 bp

>NTDB_id=925216 AB5J56_RS38465 WP_369239981.1 8610581..8611216(-) (clpP) [Streptomyces sp. R21]
ATGAACGAACCGACCGCTCGTCACGTCCTGCCCGAATTCACCGAGCGCACCAGTGCCGGGCACCGGAGCCTGGATCCGTA
CTCGAAGCTCCTCGACGAGCGGATCGTCTTCCTGGGGACCCCCATCGACGACACGTCGGCGAACGACGTGATGGCGCAGT
TCATGCACCTCGAATACCTGGCGCCGGACCGGGACATCGCGCTGTACATCAACTCCCCCGGCGGCTCGTTCAGTGCGATG
ACGGCCGTCTACGACACGATGCAGTTCGTCACCTGCGACGTGGAGACGGTCTGCCTGGGGCAGGCCGCCTCGGCCGCGGC
CGTCCTGCTGGCGGGCGGCACTTCGGGCAAGCGGTCCGCGCTGCCCGGTGCCCGGGTGCTGCTCCATCAGCCCTCGTTCA
CCGAGCCGATCGAGGGTCAGGCGAGTGATCTGGCCATCCAGGCCGAGGAGTTGATGCGCACCCGGAAGATGCTGGAGGAG
ATGCTCGTACGGCACACCGGGCAGAGCGCGGAGCAAGTCGCCGCGGACATCGAGCGGGACAAGATCCTGGACGCCCCGGC
GGCACTCGCCTACGGACTGGTGGACGCGATCGTCCCGAGCCGCAAGACCTCGGGCACCGCGCCGGGCGCGAGGTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (20-199)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	44.503	90.521	0.403
clpP	Streptococcus mutans UA159	43.814	91.943	0.403
clpP	Streptococcus pneumoniae Rx1	44.041	91.469	0.403
clpP	Streptococcus pneumoniae D39	44.041	91.469	0.403
clpP	Streptococcus pneumoniae R6	44.041	91.469	0.403
clpP	Streptococcus pneumoniae TIGR4	44.041	91.469	0.403
clpP	Streptococcus pyogenes MGAS315	42.784	91.943	0.393
clpP	Streptococcus thermophilus LMG 18311	42.784	91.943	0.393
clpP	Streptococcus thermophilus LMD-9	42.784	91.943	0.393
clpP	Streptococcus pyogenes JRS4	42.784	91.943	0.393
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	43.915	89.573	0.393
clpP	Lactococcus lactis subsp. cremoris KW2	42.268	91.943	0.389
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	42.268	91.943	0.389