Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   VKP53_RS01595 Genome accession   NZ_CP142354
Coordinates   295265..295816 (+) Length   183 a.a.
NCBI ID   WP_111688228.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6745-99     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 290265..300816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP53_RS01595 (VKP53_01595) comX/sigX/comX2/sigX2 295265..295816 (+) 552 WP_111688228.1 sigma-70 family RNA polymerase sigma factor Regulator
  VKP53_RS01600 (VKP53_01600) truA 296001..296750 (+) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  VKP53_RS01605 (VKP53_01605) - 296740..297504 (+) 765 WP_002988136.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  VKP53_RS01610 (VKP53_01610) - 297494..297964 (+) 471 WP_115230384.1 ECF transporter S component -
  VKP53_RS01615 (VKP53_01615) - 297978..298538 (+) 561 WP_002988142.1 TIGR01440 family protein -
  VKP53_RS01620 (VKP53_01620) - 298603..299448 (-) 846 WP_326674901.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22307.16 Da        Isoelectric Point: 10.0375

>NTDB_id=925206 VKP53_RS01595 WP_111688228.1 295265..295816(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 6745-99]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNLQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=925206 VKP53_RS01595 WP_111688228.1 295265..295816(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 6745-99]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTTGCAAGAGCGTATGCAATTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAAGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.