Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   VKP38_RS01725 Genome accession   NZ_CP142352
Coordinates   311733..312275 (+) Length   180 a.a.
NCBI ID   WP_326611484.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 2907-97     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 306733..317275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP38_RS01725 (VKP38_01725) comX/sigX/comX2/sigX2 311733..312275 (+) 543 WP_326611484.1 sigma-70 family RNA polymerase sigma factor Regulator
  VKP38_RS01730 (VKP38_01730) truA 312471..313220 (+) 750 WP_063629239.1 tRNA pseudouridine(38-40) synthase TruA -
  VKP38_RS01735 (VKP38_01735) - 313210..313974 (+) 765 WP_002988136.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  VKP38_RS01740 (VKP38_01740) - 313964..314434 (+) 471 WP_011106596.1 ECF transporter S component -
  VKP38_RS01745 (VKP38_01745) - 314448..315008 (+) 561 WP_063629237.1 TIGR01440 family protein -
  VKP38_RS01750 (VKP38_01750) - 315073..315918 (-) 846 WP_063629236.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21907.67 Da        Isoelectric Point: 10.0375

>NTDB_id=925094 VKP38_RS01725 WP_326611484.1 311733..312275(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 2907-97]
MSCCFLVVLFILGIVKKKRRLKMSIETRTAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFA

Nucleotide


Download         Length: 543 bp        

>NTDB_id=925094 VKP38_RS01725 WP_326611484.1 311733..312275(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 2907-97]
ATGTCCTGTTGTTTTCTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAACAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.