Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   VKP35_RS08120 Genome accession   NZ_CP142349
Coordinates   1566628..1567179 (-) Length   183 a.a.
NCBI ID   WP_079993350.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 11RS100     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1561628..1572179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP35_RS08085 (VKP35_08085) - 1561631..1562374 (-) 744 WP_172450333.1 class I SAM-dependent DNA methyltransferase -
  VKP35_RS08090 (VKP35_08090) rsfS 1562422..1562775 (-) 354 WP_011017339.1 ribosome silencing factor -
  VKP35_RS08095 (VKP35_08095) yqeK 1562799..1563392 (-) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  VKP35_RS08100 (VKP35_08100) - 1563389..1564021 (-) 633 WP_002991091.1 nicotinate-nucleotide adenylyltransferase -
  VKP35_RS08105 (VKP35_08105) yhbY 1564090..1564398 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  VKP35_RS08110 (VKP35_08110) yqeH 1564424..1565542 (-) 1119 WP_002985994.1 ribosome biogenesis GTPase YqeH -
  VKP35_RS08115 (VKP35_08115) - 1565542..1566069 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  VKP35_RS08120 (VKP35_08120) comX/sigX/comX2/sigX2 1566628..1567179 (-) 552 WP_079993350.1 competence protein ComX Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22297.08 Da        Isoelectric Point: 10.0375

>NTDB_id=924959 VKP35_RS08120 WP_079993350.1 1566628..1567179(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 11RS100]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVSYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=924959 VKP35_RS08120 WP_079993350.1 1566628..1567179(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 11RS100]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGTCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.