Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   VKP35_RS01555 Genome accession   NZ_CP142349
Coordinates   286154..286705 (+) Length   183 a.a.
NCBI ID   WP_326623426.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 11RS100     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 281154..291705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP35_RS01555 (VKP35_01555) comX/sigX/comX2/sigX2 286154..286705 (+) 552 WP_326623426.1 sigma-70 family RNA polymerase sigma factor Regulator
  VKP35_RS01560 (VKP35_01560) truA 286892..287641 (+) 750 WP_002982817.1 tRNA pseudouridine(38-40) synthase TruA -
  VKP35_RS01565 (VKP35_01565) - 287631..288395 (+) 765 WP_002982821.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  VKP35_RS01570 (VKP35_01570) - 288385..288855 (+) 471 WP_002982824.1 ECF transporter S component -
  VKP35_RS01575 (VKP35_01575) - 288869..289429 (+) 561 WP_002982828.1 TIGR01440 family protein -
  VKP35_RS01580 (VKP35_01580) - 289494..290339 (-) 846 WP_002982833.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22255.00 Da        Isoelectric Point: 10.0375

>NTDB_id=924931 VKP35_RS01555 WP_326623426.1 286154..286705(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 11RS100]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKGKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVSYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=924931 VKP35_RS01555 WP_326623426.1 286154..286705(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 11RS100]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGGTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGTCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.