Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J58_RS17555 Genome accession   NZ_CP163431
Coordinates   3782118..3782771 (-) Length   217 a.a.
NCBI ID   WP_369188154.1    Uniprot ID   -
Organism   Streptomyces sp. R08     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3777118..3787771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J58_RS17530 (AB5J58_17530) - 3778451..3779692 (+) 1242 WP_369188153.1 DUF6777 domain-containing protein -
  AB5J58_RS17535 (AB5J58_17535) - 3779776..3780237 (+) 462 WP_266774916.1 ATP-binding protein -
  AB5J58_RS17540 (AB5J58_17540) - 3780241..3781020 (-) 780 WP_369192564.1 class I SAM-dependent methyltransferase -
  AB5J58_RS17545 (AB5J58_17545) - 3781108..3781500 (+) 393 WP_266774917.1 RodZ family helix-turn-helix domain-containing protein -
  AB5J58_RS17550 (AB5J58_17550) clpP 3781514..3782116 (-) 603 WP_328833472.1 ClpP family protease Regulator
  AB5J58_RS17555 (AB5J58_17555) clpP 3782118..3782771 (-) 654 WP_369188154.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J58_RS17560 (AB5J58_17560) - 3782991..3783494 (+) 504 WP_369192565.1 VOC family protein -
  AB5J58_RS17565 (AB5J58_17565) - 3783835..3785418 (+) 1584 WP_329556686.1 ABC transporter substrate-binding protein -
  AB5J58_RS17570 (AB5J58_17570) - 3785421..3786377 (+) 957 WP_329556687.1 ABC transporter permease -
  AB5J58_RS17575 (AB5J58_17575) - 3786374..3787261 (+) 888 WP_369188155.1 ABC transporter permease -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23483.55 Da        Isoelectric Point: 4.9065

>NTDB_id=924926 AB5J58_RS17555 WP_369188154.1 3782118..3782771(-) (clpP) [Streptomyces sp. R08]
MSPLTAGFAPALMPRAEEGDTPSSRFDDHLAAQLLGQRIVFLGTQVDEVSANRVCAQLLLLSAEDPRTDISLYINSPGGS
VTAGLAIYDTMQLIPNDVATLAMGFAASMGQFLLSVGTRGKRYALPHARVMMHQPSAGIGGTTADIEIQAENLDFTKRTI
ERLTAEHTGQSEETISRDGDRDRWFTAEQAKEYGMVDRVVASLDDVRPAASKRRMGL

Nucleotide


Download         Length: 654 bp        

>NTDB_id=924926 AB5J58_RS17555 WP_369188154.1 3782118..3782771(-) (clpP) [Streptomyces sp. R08]
ATGTCTCCCCTCACGGCCGGTTTCGCGCCGGCCCTCATGCCCCGCGCCGAGGAGGGCGACACCCCGTCGTCCCGCTTCGA
CGACCATCTCGCCGCCCAACTGCTGGGCCAGCGCATCGTGTTCCTCGGCACCCAGGTCGACGAGGTCTCCGCGAACCGGG
TCTGCGCGCAGCTGCTGCTCCTGTCCGCGGAGGACCCGCGCACGGACATCAGCCTGTACATCAACAGCCCCGGCGGCTCG
GTGACGGCGGGCCTCGCGATCTACGACACGATGCAGCTGATCCCGAACGACGTCGCCACGCTGGCCATGGGTTTCGCGGC
CAGCATGGGCCAGTTCCTGCTCAGCGTCGGCACCCGGGGCAAGCGCTACGCCCTCCCCCACGCGCGGGTCATGATGCACC
AGCCGTCGGCGGGCATCGGCGGCACCACCGCCGACATCGAGATCCAGGCGGAGAACCTGGACTTCACCAAGCGGACCATC
GAGCGGCTGACCGCAGAGCACACGGGCCAGAGCGAGGAGACGATCTCCCGCGACGGCGACCGCGACCGCTGGTTCACGGC
CGAACAGGCCAAGGAGTACGGCATGGTCGACCGGGTCGTCGCCTCCCTGGACGACGTCCGCCCGGCCGCCTCGAAGCGAC
GGATGGGGCTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

47.959

90.323

0.433
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

44.56

88.94

0.396
  clpP Lactococcus lactis subsp. cremoris KW2

43.523

88.94

0.387
  clpP Streptococcus pneumoniae R6

47.429

80.645

0.382
  clpP Streptococcus pneumoniae TIGR4

47.429

80.645

0.382
  clpP Streptococcus pneumoniae Rx1

47.429

80.645

0.382
  clpP Streptococcus pneumoniae D39

47.429

80.645

0.382
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.005

88.94

0.382
  clpP Streptococcus pyogenes JRS4

45.665

79.724

0.364
  clpP Streptococcus pyogenes MGAS315

45.665

79.724

0.364