NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	AB5J58_RS17550	Genome accession	NZ_CP163431
Coordinates	3781514..3782116 (-)	Length	200 a.a.
NCBI ID	WP_328833472.1	Uniprot ID	-
Organism	Streptomyces sp. R08
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3776514..3787116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J58_RS17520 (AB5J58_17520)	-	3776555..3776968 (-)	414	WP_369188151.1	nuclear transport factor 2 family protein	-
AB5J58_RS17525 (AB5J58_17525)	-	3777000..3778289 (-)	1290	WP_369188152.1	streptophobe family protein	-
AB5J58_RS17530 (AB5J58_17530)	-	3778451..3779692 (+)	1242	WP_369188153.1	DUF6777 domain-containing protein	-
AB5J58_RS17535 (AB5J58_17535)	-	3779776..3780237 (+)	462	WP_266774916.1	ATP-binding protein	-
AB5J58_RS17540 (AB5J58_17540)	-	3780241..3781020 (-)	780	WP_369192564.1	class I SAM-dependent methyltransferase	-
AB5J58_RS17545 (AB5J58_17545)	-	3781108..3781500 (+)	393	WP_266774917.1	RodZ family helix-turn-helix domain-containing protein	-
AB5J58_RS17550 (AB5J58_17550)	clpP	3781514..3782116 (-)	603	WP_328833472.1	ClpP family protease	Regulator
AB5J58_RS17555 (AB5J58_17555)	clpP	3782118..3782771 (-)	654	WP_369188154.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J58_RS17560 (AB5J58_17560)	-	3782991..3783494 (+)	504	WP_369192565.1	VOC family protein	-
AB5J58_RS17565 (AB5J58_17565)	-	3783835..3785418 (+)	1584	WP_329556686.1	ABC transporter substrate-binding protein	-
AB5J58_RS17570 (AB5J58_17570)	-	3785421..3786377 (+)	957	WP_329556687.1	ABC transporter permease	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 21692.59 Da Isoelectric Point: 5.0213

                                >NTDB_id=924925 AB5J58_RS17550 WP_328833472.1 3781514..3782116(-) (clpP) [Streptomyces sp. R08]

MGTYTIPNVVERTPNGERSYDVFSRLLSERIIFLGTDIDDGVANVVIAQLLHLESSSPESEIAIYINSPGGSFTSLMAIY

DTMTYVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLGQPATGGQRGMVSDLALQAKEMVRIRSQVEEVLSRH

THHDIPTLRADMDRDKVFTAQEAVAYGLADEVVSRRLGQA

Nucleotide

Download Length: 603 bp

                                >NTDB_id=924925 AB5J58_RS17550 WP_328833472.1 3781514..3782116(-) (clpP) [Streptomyces sp. R08]

ATGGGGACGTACACGATTCCGAACGTCGTCGAGCGCACCCCGAACGGCGAGCGTTCGTACGACGTGTTCAGCCGGCTGCT

GTCCGAGCGGATCATCTTCCTCGGCACCGACATCGACGACGGCGTCGCCAACGTCGTCATCGCGCAACTCCTCCATCTGG

AGTCGTCGTCGCCGGAGAGCGAGATCGCGATCTACATCAACTCGCCCGGGGGATCGTTCACTTCACTGATGGCGATCTAC

GACACCATGACGTACGTCCAGGCCCCGATCTCGACGTTCTGCGTCGGTCAGGCCGCGTCGACGGCGGCGGTGCTGCTGGC

CGGCGGGGACCCGGGGCGCCGGTTCGTCCTGGAGCACGCGCGTGTGCTGCTCGGTCAGCCGGCGACCGGCGGGCAACGCG

GGATGGTCTCCGATCTCGCCCTCCAGGCCAAGGAGATGGTGCGGATCCGCTCCCAGGTGGAGGAGGTGCTGTCCCGGCAC

ACCCACCACGACATCCCCACGCTGCGCGCCGACATGGACCGGGACAAGGTGTTCACCGCTCAGGAGGCCGTGGCGTACGG

CCTGGCCGACGAGGTGGTCAGCCGACGCCTCGGCCAGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	46.032	94.5	0.435
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	45.263	95	0.43
clpP	Streptococcus mutans UA159	39.683	94.5	0.375
clpP	Streptococcus pneumoniae R6	38.542	96	0.37
clpP	Streptococcus pneumoniae TIGR4	38.542	96	0.37
clpP	Streptococcus pneumoniae Rx1	38.542	96	0.37
clpP	Streptococcus pneumoniae D39	38.542	96	0.37
clpP	Streptococcus pyogenes JRS4	39.153	94.5	0.37
clpP	Streptococcus pyogenes MGAS315	39.153	94.5	0.37
clpP	Streptococcus thermophilus LMG 18311	37.5	96	0.36
clpP	Streptococcus thermophilus LMD-9	37.5	96	0.36

Detailed information NTG0924925