Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB0R08_RS07070 Genome accession   NZ_CP162609
Coordinates   1564131..1564814 (+) Length   227 a.a.
NCBI ID   WP_006124415.1    Uniprot ID   A0ABQ2SJT8
Organism   Streptomyces sp. 1268     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559131..1569814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R08_RS07040 - 1559329..1560495 (-) 1167 WP_408991449.1 acyltransferase family protein -
  AB0R08_RS07045 - 1560995..1561189 (+) 195 WP_069738267.1 hypothetical protein -
  AB0R08_RS07060 tig 1561745..1563145 (+) 1401 WP_075266466.1 trigger factor -
  AB0R08_RS07065 - 1563443..1564048 (+) 606 WP_030708378.1 ATP-dependent Clp protease proteolytic subunit -
  AB0R08_RS07070 clpP 1564131..1564814 (+) 684 WP_006124415.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB0R08_RS07075 clpX 1564972..1566270 (+) 1299 WP_006124414.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB0R08_RS07080 - 1566344..1567333 (-) 990 WP_093806699.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24840.18 Da        Isoelectric Point: 4.6867

>NTDB_id=924040 AB0R08_RS07070 WP_006124415.1 1564131..1564814(+) (clpP) [Streptomyces sp. 1268]
MVNTHMNNFSGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLARHSTTPLEKISEDIERDKILTAEDALAYGLVDQIVSTRKTTAGASL

Nucleotide


Download         Length: 684 bp        

>NTDB_id=924040 AB0R08_RS07070 WP_006124415.1 1564131..1564814(+) (clpP) [Streptomyces sp. 1268]
ATGGTGAACACCCACATGAACAACTTCTCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGTGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTCCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCCGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTCGCCGCCGGCACCC
CGGGCAAGCGCATGGCGCTCCCGCACGCCCGGGTCCTCATCCACCAGCCGTCCTCGCAGACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTCCGTATGCGTACGCAGCTGGAGGAGATGCTGGCCCGGCACTCGACGACCCC
GCTGGAGAAGATCAGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGGCCTACGGTCTGGTCGACC
AGATCGTTTCCACCCGCAAGACCACCGCGGGCGCATCGCTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.7

0.423
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.34

82.819

0.392
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus pyogenes JRS4

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMG 18311

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMD-9

43.814

85.463

0.374
  clpP Streptococcus pyogenes MGAS315

43.814

85.463

0.374
  clpP Streptococcus mutans UA159

44.211

83.7

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37
  clpP Streptococcus pneumoniae Rx1

43.523

85.022

0.37
  clpP Streptococcus pneumoniae D39

43.523

85.022

0.37
  clpP Streptococcus pneumoniae R6

43.523

85.022

0.37
  clpP Streptococcus pneumoniae TIGR4

43.523

85.022

0.37