Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB3425_RS12480 Genome accession   NZ_CP162429
Coordinates   2506862..2507449 (-) Length   195 a.a.
NCBI ID   WP_001049165.1    Uniprot ID   A0A0D1I3W4
Organism   Staphylococcus aureus strain TUM22705     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2501862..2512449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3425_RS12465 (AB3425_12465) - 2502729..2503742 (-) 1014 WP_000654030.1 sugar-binding transcriptional regulator -
  AB3425_RS12470 (AB3425_12470) - 2504385..2505014 (-) 630 WP_000070826.1 DUF4887 domain-containing protein -
  AB3425_RS12475 (AB3425_12475) - 2505717..2506619 (+) 903 WP_000816295.1 TIGR01777 family oxidoreductase -
  AB3425_RS12480 (AB3425_12480) clpP 2506862..2507449 (-) 588 WP_001049165.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  AB3425_RS12485 (AB3425_12485) whiA 2508022..2508966 (-) 945 WP_000006551.1 DNA-binding protein WhiA -
  AB3425_RS12490 (AB3425_12490) - 2509076..2510071 (-) 996 WP_001248939.1 YvcK family protein -
  AB3425_RS12495 (AB3425_12495) rapZ 2510068..2510979 (-) 912 WP_000369722.1 RNase adapter RapZ -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21513.57 Da        Isoelectric Point: 4.8965

>NTDB_id=921658 AB3425_RS12480 WP_001049165.1 2506862..2507449(-) (clpP) [Staphylococcus aureus strain TUM22705]
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDT
IQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQ
SIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=921658 AB3425_RS12480 WP_001049165.1 2506862..2507449(-) (clpP) [Staphylococcus aureus strain TUM22705]
ATGAATTTAATTCCTACAGTTATTGAAACAACAAACCGCGGTGAACGTGCATATGATATATACTCACGTTTATTAAAAGA
CCGTATTATTATGTTAGGTTCACAAATTGATGACAACGTAGCAAATTCAATCGTATCACAGTTATTATTCTTACAAGCGC
AAGACTCAGAGAAAGATATTTATTTATACATTAATTCACCAGGTGGAAGTGTAACAGCTGGTTTTGCGATTTATGATACA
ATTCAACACATTAAACCTGATGTTCAAACAATTTGTATCGGTATGGCTGCATCAATGGGATCATTCTTATTAGCAGCTGG
TGCAAAAGGTAAACGTTTCGCGTTACCAAATGCAGAAGTAATGATTCACCAACCATTAGGTGGTGCTCAAGGACAAGCAA
CTGAAATCGAAATTGCTGCAAATCACATTTTAAAAACACGTGAAAAATTAAACCGCATTTTATCAGAGCGTACTGGTCAA
AGTATTGAAAAAATACAAAAAGACACAGATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGA
TGAAGTGATGGTACCTGAAACAAAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 9JOP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

81.053

97.436

0.79
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.085

96.41

0.656
  clpP Streptococcus pneumoniae Rx1

63.684

97.436

0.621
  clpP Streptococcus pneumoniae D39

63.684

97.436

0.621
  clpP Streptococcus pneumoniae R6

63.684

97.436

0.621
  clpP Streptococcus pneumoniae TIGR4

63.684

97.436

0.621
  clpP Streptococcus thermophilus LMG 18311

63.158

97.436

0.615
  clpP Streptococcus thermophilus LMD-9

63.158

97.436

0.615
  clpP Lactococcus lactis subsp. cremoris KW2

62.105

97.436

0.605
  clpP Streptococcus mutans UA159

61.257

97.949

0.6
  clpP Streptococcus pyogenes JRS4

61.053

97.436

0.595
  clpP Streptococcus pyogenes MGAS315

61.053

97.436

0.595
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

60

97.436

0.585