NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	VOI49_RS02350	Genome accession	NZ_CP142018
Coordinates	436570..437160 (+)	Length	196 a.a.
NCBI ID	WP_002985850.1	Uniprot ID	A0A9X8T4H8
Organism	Streptococcus dysgalactiae strain lu24
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 431570..442160

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VOI49_RS02335	-	432351..433796 (-)	1446	WP_115246633.1	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	-
VOI49_RS02340	-	433884..435518 (+)	1635	WP_065354903.1	polysaccharide biosynthesis protein	-
VOI49_RS02345	upp	435717..436346 (+)	630	WP_003058279.1	uracil phosphoribosyltransferase	-
VOI49_RS02350	clpP	436570..437160 (+)	591	WP_002985850.1	ATP-dependent Clp protease proteolytic subunit	Regulator
VOI49_RS02355	-	437557..437853 (+)	297	WP_003049802.1	DUF4298 domain-containing protein	-
VOI49_RS02360	-	437928..438398 (+)	471	WP_003049803.1	YlbF family regulator	-
VOI49_RS02365	-	438374..438664 (+)	291	WP_003049804.1	YlbG family protein	-
VOI49_RS02370	-	438912..440084 (+)	1173	WP_226313658.1	ABC transporter substrate-binding protein	-
VOI49_RS02375	-	440277..441146 (+)	870	WP_226313659.1	branched-chain amino acid ABC transporter permease	-
VOI49_RS02380	-	441150..442103 (+)	954	WP_003049807.1	branched-chain amino acid ABC transporter permease	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21648.88 Da Isoelectric Point: 5.2834

                                >NTDB_id=921009 VOI49_RS02350 WP_002985850.1 436570..437160(+) (clpP) [Streptococcus dysgalactiae strain lu24]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKADVQTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGK

TIKQIHKDAERDYWMSAEETLAYGFIDEIMENNELK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=921009 VOI49_RS02350 WP_002985850.1 436570..437160(+) (clpP) [Streptococcus dysgalactiae strain lu24]

ATGATTCCTGTTGTTATTGAACAAACTAGTCGTGGTGAACGTTCTTATGACATTTACTCACGCTTATTAAAAGACCGTAT

TATCATGTTGACAGGGCCTGTTGAGGACAACATGGCAAACTCTGTCATTGCGCAGCTTTTATTCCTTGATGCTCAGGACA

ATACGAAAGACATTTATTTGTATGTCAACACACCTGGTGGTTCTGTTTCAGCGGGTTTGGCTATTGTCGACACCATGAAC

TTTATCAAAGCTGATGTCCAAACCATTGTTATGGGGATGGCCGCTTCTATGGGGACTGTCATTGCTTCATCAGGTACTAA

GGGTAAACGCTTCATGTTACCAAATGCAGAATACATGATTCACCAACCAATGGGTGGTACAGGTGGTGGTACCCAACAAA

CAGATATGGCCATTGCTGCAGAGCACCTCTTAAAAACTCGTCACCGTTTAGAAAAAATCTTAGCACAAAATGCTGGAAAG

ACCATTAAACAAATTCATAAAGATGCTGAACGTGATTATTGGATGAGTGCTGAAGAAACCTTGGCTTACGGTTTCATTGA

TGAAATCATGGAAAATAACGAATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes MGAS315	100	100	1
clpP	Streptococcus pyogenes JRS4	100	100	1
clpP	Streptococcus mutans UA159	90.816	100	0.908
clpP	Streptococcus pneumoniae Rx1	90.769	99.49	0.903
clpP	Streptococcus pneumoniae D39	90.769	99.49	0.903
clpP	Streptococcus pneumoniae R6	90.769	99.49	0.903
clpP	Streptococcus pneumoniae TIGR4	90.769	99.49	0.903
clpP	Streptococcus thermophilus LMG 18311	89.796	100	0.898
clpP	Streptococcus thermophilus LMD-9	89.796	100	0.898
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	86.224	100	0.862
clpP	Lactococcus lactis subsp. cremoris KW2	85.714	100	0.857
clpP	Bacillus subtilis subsp. subtilis str. 168	57.143	100	0.571
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.995	98.469	0.561

Detailed information NTG0921009