Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OCV56_RS04515 Genome accession   NZ_AP025492
Coordinates   1003165..1003464 (+) Length   99 a.a.
NCBI ID   WP_086712330.1    Uniprot ID   A0A5M9ND28
Organism   Vibrio gigantis strain LMG 22741     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 998165..1008464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS04505 - 1000580..1000852 (+) 273 WP_004736083.1 HU family DNA-binding protein -
  OCV56_RS04510 ppiD 1001073..1002938 (+) 1866 WP_086712331.1 peptidylprolyl isomerase -
  OCV56_RS04515 comEA 1003165..1003464 (+) 300 WP_086712330.1 helix-hairpin-helix domain-containing protein Machinery gene
  OCV56_RS04520 rrtA 1003455..1004003 (-) 549 WP_086712329.1 rhombosortase -
  OCV56_RS04525 - 1004013..1004612 (+) 600 WP_086712328.1 tRNA-uridine aminocarboxypropyltransferase -
  OCV56_RS04530 - 1004639..1005982 (-) 1344 WP_086712327.1 anti-phage deoxyguanosine triphosphatase -
  OCV56_RS04535 yfbR 1006038..1006622 (-) 585 WP_004739934.1 5'-deoxynucleotidase -
  OCV56_RS04540 - 1006794..1008026 (-) 1233 WP_004739935.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10835.42 Da        Isoelectric Point: 4.3322

>NTDB_id=92086 OCV56_RS04515 WP_086712330.1 1003165..1003464(+) (comEA) [Vibrio gigantis strain LMG 22741]
MRTIYSTLLLSFLMLLSPAVFADSPTKAELYDGIEITVNINTATAEELSALLIGVGDKKAKEIVDYRDQNGLFTTADDLV
SVKGIGEATVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=92086 OCV56_RS04515 WP_086712330.1 1003165..1003464(+) (comEA) [Vibrio gigantis strain LMG 22741]
ATGCGCACGATATATTCAACACTACTTCTTTCATTTCTGATGCTCTTAAGCCCTGCCGTATTTGCAGACAGTCCAACCAA
GGCTGAGCTTTACGATGGCATTGAGATTACGGTAAATATCAATACCGCAACAGCAGAAGAGCTTTCAGCACTATTGATTG
GTGTAGGTGACAAGAAAGCCAAAGAGATCGTCGATTACAGAGATCAGAACGGGTTATTTACGACTGCTGATGATTTGGTC
AGTGTCAAAGGGATAGGTGAAGCGACGGTTGAAAAGAATCGAGAAAGAATTCAGCTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9ND28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

55.67

97.98

0.545
  comEA Vibrio cholerae C6706

55.67

97.98

0.545
  comEA Vibrio campbellii strain DS40M4

57.609

92.929

0.535
  comEA Vibrio parahaemolyticus RIMD 2210633

55.319

94.949

0.525
  comEA Acinetobacter baumannii strain A118

32.308

100

0.424
  comE1/comEA Haemophilus influenzae Rd KW20

36.937

100

0.414
  comEA Acinetobacter baylyi ADP1

48.78

82.828

0.404

Multiple sequence alignment