Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   VML59_RS23765 Genome accession   NZ_CP142003
Coordinates   4539261..4539842 (+) Length   193 a.a.
NCBI ID   WP_001049154.1    Uniprot ID   A0A2N1JX27
Organism   Bacillus pacificus strain AT31     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4534261..4544842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VML59_RS23725 - 4534696..4535049 (-) 354 WP_000734942.1 YxeA family protein -
  VML59_RS23730 - 4535255..4535461 (+) 207 WP_000216166.1 DUF1657 domain-containing protein -
  VML59_RS23735 - 4535555..4536043 (+) 489 WP_001226063.1 YhcN/YlaJ family sporulation lipoprotein -
  VML59_RS23740 spoVAC 4536073..4536549 (+) 477 WP_000095406.1 stage V sporulation protein AC -
  VML59_RS23745 spoVAD 4536550..4537566 (+) 1017 WP_000938952.1 stage V sporulation protein AD -
  VML59_RS23750 spoVAE 4537563..4537913 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  VML59_RS23755 - 4537923..4538129 (+) 207 WP_000215900.1 DUF1657 domain-containing protein -
  VML59_RS23760 - 4538150..4539019 (+) 870 WP_000018909.1 DUF421 domain-containing protein -
  VML59_RS23765 clpP 4539261..4539842 (+) 582 WP_001049154.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  VML59_RS23770 - 4540360..4540608 (-) 249 WP_000250307.1 HPr family phosphocarrier protein -
  VML59_RS23775 whiA 4540632..4541582 (-) 951 WP_000006561.1 DNA-binding protein WhiA -
  VML59_RS23780 - 4541672..4542625 (-) 954 WP_000712176.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  VML59_RS23785 rapZ 4542629..4543510 (-) 882 WP_000138457.1 RNase adapter RapZ -
  VML59_RS23790 - 4543531..4543989 (-) 459 WP_001190080.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21405.64 Da        Isoelectric Point: 5.0344

>NTDB_id=920830 VML59_RS23765 WP_001049154.1 4539261..4539842(+) (clpP) [Bacillus pacificus strain AT31]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPDKDIHLYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=920830 VML59_RS23765 WP_001049154.1 4539261..4539842(+) (clpP) [Bacillus pacificus strain AT31]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGCGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGACAAAGATATTCACCTATACATCAATAGTCCAGGTGGTTCTATCACAGCAGGTATGGCAATTTACGATACA
ATGCAGTTTATTAAACCGCAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGTGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCTAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N1JX27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.553

97.409

0.658
  clpP Streptococcus thermophilus LMG 18311

60.938

99.482

0.606
  clpP Streptococcus thermophilus LMD-9

60.938

99.482

0.606
  clpP Lactococcus lactis subsp. cremoris KW2

59.375

99.482

0.591
  clpP Streptococcus pneumoniae Rx1

57.812

99.482

0.575
  clpP Streptococcus pneumoniae D39

57.812

99.482

0.575
  clpP Streptococcus pneumoniae R6

57.812

99.482

0.575
  clpP Streptococcus pneumoniae TIGR4

57.812

99.482

0.575
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

57.292

99.482

0.57
  clpP Streptococcus mutans UA159

55.959

100

0.56
  clpP Streptococcus pyogenes JRS4

56.25

99.482

0.56
  clpP Streptococcus pyogenes MGAS315

56.25

99.482

0.56