Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   VK748_RS12650 Genome accession   NZ_CP141948
Coordinates   2702938..2705025 (+) Length   695 a.a.
NCBI ID   WP_324711070.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain G5.41a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2697938..2710025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK748_RS12630 (VK748_12630) pilM 2700044..2701108 (+) 1065 WP_009613650.1 pilus assembly protein PilM Machinery gene
  VK748_RS12635 (VK748_12635) pilN 2701108..2701707 (+) 600 WP_009613648.1 type 4a pilus biogenesis protein PilN -
  VK748_RS12640 (VK748_12640) pilO 2701704..2702360 (+) 657 WP_009613645.1 type 4a pilus biogenesis protein PilO -
  VK748_RS12645 (VK748_12645) pilP 2702357..2702881 (+) 525 WP_009613643.1 type 4a pilus biogenesis lipoprotein PilP -
  VK748_RS12650 (VK748_12650) pilQ 2702938..2705025 (+) 2088 WP_324711070.1 type IV pilus secretin PilQ Machinery gene
  VK748_RS12655 (VK748_12655) aroK 2705034..2705552 (+) 519 WP_324711071.1 shikimate kinase AroK -
  VK748_RS12660 (VK748_12660) aroB 2705604..2706710 (+) 1107 WP_009613636.1 3-dehydroquinate synthase -
  VK748_RS12665 (VK748_12665) - 2706717..2708393 (+) 1677 WP_324711072.1 AAA family ATPase -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 74823.98 Da        Isoelectric Point: 5.2731

>NTDB_id=920551 VK748_RS12650 WP_324711070.1 2702938..2705025(+) (pilQ) [Pseudomonas citronellolis strain G5.41a]
MNRTMTRLGFALLAGLFAPSLLAANLQRVDVASLPGDRVELKLGFDEPVAAPRGYTIEQPARIALDLPGVQNKLGSKNRE
LGVGNARSLTVVEAKDRTRLIINLTTLVPYSTRAQGNDLIILVGQGGGAPAAAASSAPSAAPAYAAAPRPAQPKPYVPVG
KAIRNIDFQRGEQGEGNVVIDLSDPSVSPDIQEQGGKIRLDFPRTQLPDSLRVRLDVKDFATPVQFVNASAAGDKASIVI
EPSGLYDYLVFQTDNRMTVSIKPMTANEAEKRKKDSFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITL
RLQNVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELEAQKQIAELAPLRRELIQVNYAKASDIAKLFQSVT
GTSSGPGAQPAAGTDNRGSITVDDRTNAIIAYQTQDRLDELRRIVSQLDIPVRQVMIEARIVEASVDYTKELGVQWGGSL
SNRGNFNITGGANSTSNTFVDLGVTTATPTSGIGIGFVTDNTTLDLQLNAMEKTGNGEVVSQPKVVTSDKETAKILKGSE
IPYQEASSSGATSVSFKEAALSLEVTPQITPDNRIIMQVKVNKDEPDYQNALLGVPPIKKNEVNAKVLVNDGETIVIGGV
FSNTQTKTTSKVPFLGDVPVVGRLFKNDYVTDTKNELLVFLTPRIMNNQAIAIDR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=920551 VK748_RS12650 WP_324711070.1 2702938..2705025(+) (pilQ) [Pseudomonas citronellolis strain G5.41a]
ATGAACAGAACTATGACCCGCCTGGGCTTTGCCCTGTTGGCCGGCCTTTTCGCGCCGAGCCTGCTCGCCGCCAACCTGCA
GCGCGTCGATGTGGCCTCGCTGCCGGGGGATCGCGTGGAGCTCAAGCTGGGCTTCGACGAGCCGGTGGCCGCGCCGCGTG
GCTACACCATCGAGCAGCCGGCGCGCATCGCCCTGGACCTGCCGGGCGTGCAGAACAAGCTGGGCAGCAAGAACCGCGAG
CTGGGCGTGGGCAACGCGCGCAGCCTGACCGTGGTCGAGGCCAAGGACCGCACCCGCCTGATCATCAACCTGACCACCCT
GGTGCCGTATTCCACCCGCGCCCAGGGCAACGACCTGATCATCCTGGTCGGCCAGGGTGGCGGCGCGCCCGCCGCGGCGG
CCAGCTCCGCGCCGAGCGCGGCCCCGGCCTATGCCGCGGCGCCTCGCCCGGCGCAGCCCAAGCCCTACGTGCCGGTGGGC
AAGGCGATCCGCAACATCGACTTCCAGCGCGGCGAGCAGGGCGAGGGCAACGTGGTCATCGACCTGTCCGACCCGAGCGT
CAGCCCGGACATCCAGGAGCAGGGCGGCAAGATCCGCCTGGACTTCCCGCGTACCCAGCTGCCCGACAGCCTGCGCGTGC
GCCTGGACGTGAAGGACTTCGCCACCCCGGTGCAGTTCGTCAACGCCTCGGCGGCCGGCGACAAGGCCAGCATCGTCATC
GAGCCCAGCGGCCTGTACGACTACCTGGTGTTCCAGACCGACAACCGCATGACCGTCAGCATCAAGCCGATGACCGCCAA
CGAGGCCGAGAAGCGCAAGAAGGACAGCTTCGCCTACACCGGCGAGAAGCTGTCGCTGAACTTCCAGGACATCGACGTGC
GCTCGGTGCTGCAGCTGATCGCCGACTTCACCGACCTCAACCTGGTGGCCTCGGACACCGTGCAGGGCAACATCACCCTG
CGCCTGCAGAACGTGCCCTGGGACCAGGCGCTGGACCTGGTGCTCAAGACCAAGGGCCTGGACAAGCGCAAGGTCGGCAA
CGTCCTGCTGGTGGCGCCGGCCGACGAGATCGCCGCGCGTGAGCGCCAGGAGCTGGAAGCGCAGAAGCAGATCGCCGAAC
TGGCGCCCCTGCGTCGCGAGCTGATCCAGGTGAACTACGCCAAGGCTTCCGACATCGCCAAGCTGTTCCAGTCCGTGACC
GGCACCAGTTCCGGCCCGGGCGCCCAGCCTGCCGCCGGCACCGACAACCGTGGCTCCATCACCGTCGACGACCGCACCAA
CGCCATCATCGCCTACCAGACCCAGGACCGCCTGGACGAGCTGCGCCGCATCGTCTCGCAGCTGGACATCCCGGTACGCC
AGGTGATGATCGAGGCGCGCATCGTCGAGGCCAGCGTCGACTACACCAAGGAGCTGGGGGTGCAATGGGGTGGTTCGCTG
AGCAATCGCGGCAACTTCAACATCACCGGTGGCGCCAACAGCACGAGCAATACCTTCGTCGACCTGGGCGTGACCACCGC
GACGCCGACCTCCGGCATCGGCATCGGCTTCGTCACCGACAACACCACCCTGGACCTGCAGCTCAACGCCATGGAGAAGA
CCGGCAACGGCGAAGTGGTGTCGCAGCCGAAGGTGGTCACCTCGGACAAGGAAACCGCGAAGATCCTCAAGGGCTCGGAG
ATTCCCTACCAGGAAGCCAGCTCCAGCGGCGCCACCTCGGTGTCCTTCAAGGAGGCTGCGCTGTCCCTGGAGGTCACTCC
GCAGATCACCCCGGACAACCGCATCATCATGCAGGTCAAGGTGAACAAGGACGAGCCCGACTACCAGAACGCGCTGCTCG
GCGTGCCGCCGATCAAGAAGAACGAGGTCAACGCCAAGGTGCTGGTCAACGACGGTGAAACCATCGTCATCGGCGGGGTG
TTCTCCAACACCCAGACCAAGACCACCTCCAAGGTCCCGTTCCTCGGCGACGTACCGGTCGTCGGCCGCCTGTTCAAGAA
CGACTATGTGACGGACACCAAGAACGAGCTTCTGGTTTTCCTCACTCCCCGGATCATGAATAATCAGGCCATTGCCATCG
ATCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(307-353)

Bacterial type II/III secretion system short domain (Secretin_N)

(381-454)

Bacterial type II and III secretion system protein (Secretin)

(530-686)

AMIN domain (AMIN)

(40-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

77.178

100

0.803
  comQ Acinetobacter baylyi ADP1

42.037

100

0.422
  pilQ Acinetobacter baumannii strain A118

40.336

100

0.414
  pilQ Acinetobacter baumannii D1279779

40.336

100

0.414
  pilQ Legionella pneumophila strain Lp02

39.239

98.273

0.386
  pilQ Legionella pneumophila strain ERS1305867

39.092

98.273

0.384