NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	VDS57_RS06235	Genome accession	NZ_CP141839
Coordinates	1155630..1156223 (+)	Length	197 a.a.
NCBI ID	WP_003228214.1	Uniprot ID	A0A199WEF2
Organism	Bacillus subtilis strain PN1236
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1150630..1161223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VDS57_RS06205 (VDS57_06205)	aspP	1151604..1153166 (+)	1563	WP_003228228.1	aspartate/proton symporter AspP	-
VDS57_RS06210 (VDS57_06210)	-	1153261..1153845 (+)	585	WP_003228226.1	TetR family transcriptional regulator	-
VDS57_RS06215 (VDS57_06215)	psmA	1153927..1154262 (+)	336	WP_014480966.1	SMR family transporter	-
VDS57_RS06220 (VDS57_06220)	psmB	1154262..1154582 (+)	321	WP_014480967.1	QacE family quaternary ammonium compound efflux SMR transporter	-
VDS57_RS06225 (VDS57_06225)	yvdQ	1154618..1155126 (-)	509	Protein_1214	DUF3231 family protein	-
VDS57_RS06235 (VDS57_06235)	clpP	1155630..1156223 (+)	594	WP_003228214.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
VDS57_RS06240 (VDS57_06240)	pgmB	1156286..1156960 (-)	675	WP_014480982.1	beta-phosphoglucomutase	-
VDS57_RS06245 (VDS57_06245)	malL	1156957..1158642 (-)	1686	WP_033881298.1	oligo-1,6-glucosidase	-
VDS57_RS06250 (VDS57_06250)	mdxK	1158635..1160908 (-)	2274	WP_324271621.1	maltose phosphorylase	-

Sequence

Protein

Download Length: 197 a.a. Molecular weight: 21682.00 Da Isoelectric Point: 4.9416

                                >NTDB_id=920136 VDS57_RS06235 WP_003228214.1 1155630..1156223(+) (clpP) [Bacillus subtilis strain PN1236]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ

PLEVIERDTDRDNFKSAEEALEYGLIDKILTHTEDKK

Nucleotide

Download Length: 594 bp

                                >NTDB_id=920136 VDS57_RS06235 WP_003228214.1 1155630..1156223(+) (clpP) [Bacillus subtilis strain PN1236]

ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA

TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGCAGCAG

AAGACCCTGAAAAAGAAATTTCTCTTTACATCAACAGCCCGGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACC

ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCATCAATGGGCGCTTTCCTGCTTGCAGCCGG

CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCACTTGGCGGTGCGCAAGGTCAGGCGA

CAGAAATTGAAATTGCCGCAAAACGCATTCTCTTGCTTCGCGACAAACTAAACAAAGTCCTTGCTGAACGTACTGGCCAG

CCGCTTGAAGTGATCGAACGCGACACAGACCGTGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA

CAAAATTTTGACTCACACAGAAGACAAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A199WEF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	100	100	1
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.617	95.431	0.655
clpP	Streptococcus thermophilus LMG 18311	58.163	99.492	0.579
clpP	Streptococcus thermophilus LMD-9	58.163	99.492	0.579
clpP	Streptococcus pneumoniae D39	57.812	97.462	0.563
clpP	Streptococcus pneumoniae Rx1	57.812	97.462	0.563
clpP	Streptococcus pneumoniae R6	57.812	97.462	0.563
clpP	Streptococcus pneumoniae TIGR4	57.812	97.462	0.563
clpP	Lactococcus lactis subsp. cremoris KW2	57.895	96.447	0.558
clpP	Streptococcus pyogenes JRS4	56.122	99.492	0.558
clpP	Streptococcus pyogenes MGAS315	56.122	99.492	0.558
clpP	Streptococcus mutans UA159	54.822	100	0.548
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.789	96.447	0.538

Detailed information NTG0920136