Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   VF946_RS02750 Genome accession   NZ_CP141824
Coordinates   538386..538976 (+) Length   196 a.a.
NCBI ID   WP_002937303.1    Uniprot ID   A0A0K2E545
Organism   Streptococcus suis strain HB18     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 533386..543976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS02730 - 533524..534354 (+) 831 WP_002937312.1 carbohydrate ABC transporter permease -
  VF946_RS02735 gtfA 534424..535872 (+) 1449 WP_074389863.1 sucrose phosphorylase -
  VF946_RS02740 - 535944..537560 (+) 1617 WP_074389864.1 glycoside hydrolase family 13 protein -
  VF946_RS02745 upp 537640..538269 (+) 630 WP_012027487.1 uracil phosphoribosyltransferase -
  VF946_RS02750 clpP 538386..538976 (+) 591 WP_002937303.1 ATP-dependent Clp protease proteolytic subunit Regulator
  VF946_RS02755 - 539093..539365 (+) 273 WP_002937299.1 YlbG family protein -
  VF946_RS02760 - 539498..540667 (+) 1170 WP_024418077.1 ABC transporter substrate-binding protein -
  VF946_RS02765 - 540868..541755 (+) 888 WP_012027482.1 branched-chain amino acid ABC transporter permease -
  VF946_RS02770 - 541758..542705 (+) 948 WP_002937293.1 branched-chain amino acid ABC transporter permease -
  VF946_RS02775 - 542705..543469 (+) 765 WP_002937291.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21494.74 Da        Isoelectric Point: 5.7110

>NTDB_id=919750 VF946_RS02750 WP_002937303.1 538386..538976(+) (clpP) [Streptococcus suis strain HB18]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK
TVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=919750 VF946_RS02750 WP_002937303.1 538386..538976(+) (clpP) [Streptococcus suis strain HB18]
ATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAGCGTTCTTATGATATTTACTCACGCCTTTTGAAAGACCGCAT
TATCATGTTGACAGGACCAGTTGAGGACAACATGGCAAACTCTATCATTGCACAATTGCTTTTCCTTGATGCCCAAGACC
CTACAAAGGATATTTACCTCTATGTTAATACGCCAGGAGGATCGGTGTCAGCAGGTCTTGCCATTGTAGACACGATGAAT
TTCATTAAAGCTGATGTTCAAACCATCGTTATGGGAACAGCTGCGAGCATGGGAACCATCATTGCATCAAGCGGTGCCAA
GGGCAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAGCCAATGGGTGGAACTGGTGGTGGTACTCAGCAAA
CAGATATGGCTATTGCTGCAGAACACCTATTAAAAACACGTAATAAGCTAGAAAAAATCTTGGCAGACAACTCAGGTAAG
ACAGTCAAGCAAATCCATAAGGATGCGGAACGCGATTACTGGATGTCAGCTGAAGAAACCTTGGCTTACGGATTTATTGA
CCAGATTATGGACAATACAAAAGTCAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2E545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

92.347

100

0.923
  clpP Streptococcus pyogenes MGAS315

92.347

100

0.923
  clpP Streptococcus mutans UA159

90.306

100

0.903
  clpP Streptococcus pneumoniae R6

88.776

100

0.888
  clpP Streptococcus pneumoniae Rx1

88.776

100

0.888
  clpP Streptococcus pneumoniae D39

88.776

100

0.888
  clpP Streptococcus pneumoniae TIGR4

88.776

100

0.888
  clpP Streptococcus thermophilus LMG 18311

88.776

100

0.888
  clpP Streptococcus thermophilus LMD-9

88.776

100

0.888
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

84.184

100

0.842
  clpP Lactococcus lactis subsp. cremoris KW2

83.673

100

0.837
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

100

0.582
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

98.469

0.577