Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VA613_RS12610 Genome accession   NZ_CP141769
Coordinates   2523902..2525125 (-) Length   407 a.a.
NCBI ID   WP_324779365.1    Uniprot ID   -
Organism   Thiobacillus sedimenti strain SCUT-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2518902..2530125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA613_RS12580 (VA613_12580) ilvA 2519192..2520709 (-) 1518 WP_324779359.1 threonine ammonia-lyase, biosynthetic -
  VA613_RS12585 (VA613_12585) rpiA 2520784..2521440 (+) 657 WP_324779360.1 ribose-5-phosphate isomerase RpiA -
  VA613_RS12590 (VA613_12590) - 2521444..2521638 (-) 195 WP_324779361.1 DNA gyrase inhibitor YacG -
  VA613_RS12595 (VA613_12595) zapD 2521635..2522390 (-) 756 WP_324779362.1 cell division protein ZapD -
  VA613_RS12600 (VA613_12600) coaE 2522443..2523051 (-) 609 WP_324779363.1 dephospho-CoA kinase -
  VA613_RS12605 (VA613_12605) pilD 2523051..2523902 (-) 852 WP_324779364.1 A24 family peptidase Machinery gene
  VA613_RS12610 (VA613_12610) pilC 2523902..2525125 (-) 1224 WP_324779365.1 type II secretion system F family protein Machinery gene
  VA613_RS12615 (VA613_12615) pilB 2525135..2526847 (-) 1713 WP_324779366.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VA613_RS12620 (VA613_12620) - 2526946..2528244 (-) 1299 WP_324779367.1 HlyC/CorC family transporter -
  VA613_RS12625 (VA613_12625) - 2528256..2529011 (-) 756 WP_324779368.1 cytochrome c biogenesis protein CcsA -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44112.29 Da        Isoelectric Point: 10.1657

>NTDB_id=919313 VA613_RS12610 WP_324779365.1 2523902..2525125(-) (pilC) [Thiobacillus sedimenti strain SCUT-2]
MATAAKAVKNATFLWEGMDKRGKKVKGQLQAGGEAMVNSTLRKQGITVTKVRKQSALFSSAKKITDKDVTLFTRQLATMM
KAGVPLLQAFEIVARGHSNPSMQRLLLEIKADIEKGSSLTQAFSRHPRYFDALFCNLVGAGEAAGILEGVLDRLAVYKEK
ILAIKSKIKSALFYPVSIIVVAFVITAIIMIFVIPAFKDLFSSFGADLPAPTLVVMAISDYFVKYWWVIFGVIGGGLYAF
FQAWKRSRKMQMTMDKLILKLPIFGPVIEKATIARWTRTLATMFAAGVPLVEALESVGGASGNQVFVEATNKIRGEVATG
TALTVAMQNTGRFPNMVLQMAAIGEESGSLDSMLGKVADFYEAEVDDAVEALSSLMEPMIMVVLGTLIGGMVIAMYLPIF
KMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=919313 VA613_RS12610 WP_324779365.1 2523902..2525125(-) (pilC) [Thiobacillus sedimenti strain SCUT-2]
ATGGCTACAGCGGCAAAGGCAGTCAAGAATGCAACCTTCCTGTGGGAGGGCATGGACAAGCGCGGCAAGAAGGTCAAGGG
GCAGCTACAGGCCGGCGGCGAAGCCATGGTGAATTCGACACTGCGCAAGCAGGGCATCACCGTCACCAAGGTCCGGAAGC
AGAGTGCTCTGTTCAGCAGTGCGAAGAAGATTACTGACAAGGACGTCACGCTGTTCACGCGTCAACTGGCCACCATGATG
AAGGCCGGGGTGCCGCTGCTGCAGGCGTTCGAGATCGTCGCGCGCGGCCATTCCAATCCCTCGATGCAGCGCCTGCTGCT
CGAGATCAAGGCCGATATCGAGAAGGGTAGCAGCCTCACACAAGCCTTCAGCCGCCATCCTCGGTATTTCGACGCCTTGT
TCTGCAACCTCGTGGGCGCTGGCGAAGCCGCCGGTATTCTCGAGGGCGTGCTCGACCGTCTCGCGGTCTACAAGGAAAAG
ATCCTCGCCATCAAGAGCAAGATCAAGTCGGCGCTGTTCTATCCGGTTTCCATTATCGTGGTCGCGTTCGTCATCACCGC
GATCATCATGATTTTCGTGATTCCGGCGTTCAAGGATCTCTTCAGCAGCTTCGGTGCCGACCTGCCGGCGCCGACCCTGG
TGGTGATGGCGATTTCGGATTATTTCGTGAAGTACTGGTGGGTCATTTTCGGCGTGATCGGCGGCGGTCTGTATGCCTTC
TTCCAGGCCTGGAAGCGTTCGCGCAAGATGCAGATGACGATGGATAAGCTGATCCTCAAGTTGCCAATCTTCGGCCCGGT
CATTGAGAAGGCGACGATCGCCCGCTGGACCCGCACCCTGGCGACGATGTTTGCGGCGGGCGTGCCGCTGGTCGAAGCGC
TGGAATCGGTCGGTGGGGCGTCGGGCAACCAGGTCTTCGTCGAGGCGACCAACAAGATCCGCGGCGAGGTGGCGACCGGC
ACGGCCCTGACGGTCGCGATGCAGAATACCGGGCGCTTCCCCAACATGGTGCTGCAGATGGCGGCCATCGGTGAGGAGTC
GGGTTCGCTCGATTCGATGCTGGGCAAGGTCGCCGACTTCTACGAGGCGGAGGTCGACGACGCCGTCGAGGCGCTGTCGA
GCCTGATGGAGCCGATGATCATGGTGGTGCTCGGCACCCTGATCGGCGGCATGGTGATCGCCATGTATCTGCCGATCTTC
AAGATGGGTTCGGTGGTCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

55.501

100

0.558
  pilC Legionella pneumophila strain ERS1305867

55.416

97.543

0.541
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.263

0.538
  pilC Acinetobacter baylyi ADP1

54.156

97.543

0.528
  pilG Neisseria gonorrhoeae MS11

52.723

99.263

0.523
  pilG Neisseria meningitidis 44/76-A

52.475

99.263

0.521
  pilC Vibrio cholerae strain A1552

41.363

100

0.418
  pilC Vibrio campbellii strain DS40M4

38.554

100

0.393