Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OCW38_RS10205 Genome accession   NZ_AP025480
Coordinates   2317309..2317608 (-) Length   99 a.a.
NCBI ID   WP_010439527.1    Uniprot ID   A0AAN0LKD1
Organism   Vibrio cyclitrophicus strain LMG 21359     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2312309..2322608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCW38_RS10180 - 2312727..2313959 (+) 1233 WP_016767085.1 pyridoxal phosphate-dependent aminotransferase -
  OCW38_RS10185 yfbR 2314129..2314713 (+) 585 WP_010439536.1 5'-deoxynucleotidase -
  OCW38_RS10190 - 2314768..2316111 (+) 1344 WP_010439534.1 anti-phage deoxyguanosine triphosphatase -
  OCW38_RS10195 - 2316144..2316743 (-) 600 WP_010439531.1 tRNA-uridine aminocarboxypropyltransferase -
  OCW38_RS10200 rrtA 2316753..2317289 (+) 537 WP_010439530.1 rhombosortase -
  OCW38_RS10205 comEA 2317309..2317608 (-) 300 WP_010439527.1 helix-hairpin-helix domain-containing protein Machinery gene
  OCW38_RS10210 ppiD 2317853..2319718 (-) 1866 WP_261893944.1 peptidylprolyl isomerase -
  OCW38_RS10215 - 2319940..2320212 (-) 273 WP_004736083.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10811.39 Da        Isoelectric Point: 5.1299

>NTDB_id=91929 OCW38_RS10205 WP_010439527.1 2317309..2317608(-) (comEA) [Vibrio cyclitrophicus strain LMG 21359]
MRTIYSTLLLSFLITLSAGVFADSPTKAELYDGIEITVNINKATAEELSALLVGVGDKKAQEIVDYRDKHGAFTKPSDLV
NVKGIGEATVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=91929 OCW38_RS10205 WP_010439527.1 2317309..2317608(-) (comEA) [Vibrio cyclitrophicus strain LMG 21359]
ATGCGAACAATATATTCAACATTACTTCTTTCATTTCTAATTACTCTGAGTGCTGGAGTGTTTGCTGATAGTCCGACTAA
GGCAGAGTTGTACGACGGCATTGAAATCACCGTAAACATCAATAAAGCTACGGCTGAGGAATTATCAGCATTACTTGTTG
GTGTGGGTGACAAAAAAGCCCAAGAGATTGTCGATTATCGGGATAAGCATGGTGCATTTACAAAACCCAGTGACTTGGTC
AATGTGAAAGGTATTGGCGAGGCAACGGTTGAAAAGAATCGTGAGCGAATTCAACTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

56.383

94.949

0.535
  comEA Vibrio campbellii strain DS40M4

55.435

92.929

0.515
  comEA Vibrio cholerae strain A1552

52.577

97.98

0.515
  comEA Vibrio cholerae C6706

52.577

97.98

0.515
  comE1/comEA Haemophilus influenzae Rd KW20

36.937

100

0.414
  comEA Acinetobacter baylyi ADP1

46.341

82.828

0.384
  comEA Lactococcus lactis subsp. cremoris KW2

44.444

81.818

0.364

Multiple sequence alignment