NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	VNN51_RS01665	Genome accession	NZ_CP141727
Coordinates	342675..343274 (+)	Length	199 a.a.
NCBI ID	WP_003134020.1	Uniprot ID	-
Organism	Lactococcus formosensis strain M20011502 FF20a2
Function	degradation of ComX; degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 337675..348274

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN51_RS01630 (VNN51_01630)	-	337836..338606 (-)	771	WP_279359164.1	ABC transporter permease	-
VNN51_RS01635 (VNN51_01635)	-	338599..339522 (-)	924	WP_017368817.1	ABC transporter ATP-binding protein	-
VNN51_RS01640 (VNN51_01640)	rnmV	339519..340064 (-)	546	WP_165711442.1	ribonuclease M5	-
VNN51_RS01645 (VNN51_01645)	-	340061..340834 (-)	774	WP_253008149.1	TatD family hydrolase	-
VNN51_RS01650 (VNN51_01650)	spx	340970..341368 (-)	399	WP_003134024.1	transcriptional regulator Spx	-
VNN51_RS01655 (VNN51_01655)	-	341529..342059 (-)	531	WP_279360514.1	hypothetical protein	-
VNN51_RS01660 (VNN51_01660)	-	342119..342496 (-)	378	WP_017368813.1	VOC family protein	-
VNN51_RS01665 (VNN51_01665)	clpP	342675..343274 (+)	600	WP_003134020.1	ATP-dependent Clp protease proteolytic subunit	Regulator
VNN51_RS01670 (VNN51_01670)	-	343374..346793 (-)	3420	WP_253008151.1	pyruvate carboxylase	-
VNN51_RS01675 (VNN51_01675)	-	346994..348217 (-)	1224	WP_017368811.1	FtsW/RodA/SpoVE family cell cycle protein	-

Sequence

Protein

Download Length: 199 a.a. Molecular weight: 21787.90 Da Isoelectric Point: 4.7242

                                >NTDB_id=919018 VNN51_RS01665 WP_003134020.1 342675..343274(+) (clpP) [Lactococcus formosensis strain M20011502 FF20a2]

MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGQVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVD

TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN

SGQSMEKVHADAERDNWMTAQETLDYGFIDEIMEANSLK

Nucleotide

Download Length: 600 bp

                                >NTDB_id=919018 VNN51_RS01665 WP_003134020.1 342675..343274(+) (clpP) [Lactococcus formosensis strain M20011502 FF20a2]

ATGGGATATTTAGTACCTACTGTCATCGAGCAATCAAGCCGTGGTGAACGCGCATATGACATTTACAGCCGTCTACTGAA

AGACCGTATCATCATGTTGACAGGCCAAGTTGAGGATGGTATGGCCAACTCAATCATCGCACAACTCCTCTTCTTGGATG

CCCAAGACAGCACAAAGGACATTTACCTCTATATTAATACACCTGGTGGTTCTGTATCTGCTGGACTTGCGATTGTGGAT

ACCATGAACTTCATCAAGTCTGATGTTCAAACAATCGTTATGGGTATCGCTGCATCTATGGGTACAATCATTGCTTCTAG

TGGTACAAAAGGTAAACGTTTCATGTTGCCACATGCAGAATACATGATTCACCAACCTATGGGAGGTACTGGTGGCGGCA

CACAACAAACAGATATGGCTATTGCTGCGGAACATTTGCTTAAAACACGTCGGACTTTAGAAAAGATTTTGGCAGAAAAC

TCTGGTCAATCTATGGAAAAAGTACATGCCGATGCAGAACGTGATAACTGGATGACTGCACAAGAAACATTAGACTATGG

TTTCATTGATGAAATCATGGAAGCCAACAGCTTGAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pneumoniae Rx1	89.796	98.492	0.884
clpP	Streptococcus pneumoniae D39	89.796	98.492	0.884
clpP	Streptococcus pneumoniae R6	89.796	98.492	0.884
clpP	Streptococcus pneumoniae TIGR4	89.796	98.492	0.884
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	87.94	100	0.879
clpP	Lactococcus lactis subsp. cremoris KW2	87.437	100	0.874
clpP	Streptococcus thermophilus LMG 18311	87.755	98.492	0.864
clpP	Streptococcus thermophilus LMD-9	87.755	98.492	0.864
clpP	Streptococcus pyogenes JRS4	84.184	98.492	0.829
clpP	Streptococcus pyogenes MGAS315	84.184	98.492	0.829
clpP	Streptococcus mutans UA159	84.184	98.492	0.829
clpP	Bacillus subtilis subsp. subtilis str. 168	58.421	95.477	0.558
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.995	96.985	0.553

Detailed information NTG0919018